PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G08410.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 254aa    MW: 27300.6 Da    PI: 8.6219
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G08410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-1894148256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  LPERR03G08410.1  94 RKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 148
                      788899***********************************************98 PP
2HD-ZIP_I/II125.62.3e-4094183191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr +l
  LPERR03G08410.1  94 RKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELR-AL 183
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-1987151IPR009057Homeodomain-like
PROSITE profilePS5007117.21690150IPR001356Homeobox domain
SMARTSM003892.1E-1592154IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-1794148IPR009057Homeodomain-like
CDDcd000862.30E-1594151No hitNo description
PfamPF000462.1E-1594148IPR001356Homeobox domain
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PfamPF021835.7E-11150184IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-23150193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAQEEDAGLA LGLSLGNGGG TARRPSPSSR AAVEQSLTLS MPDDGGGVGP AHSVSSLSVG  60
GAGVKRERAE EADGERVSST AAAGRDDDDD GSTRKKLRLT KEQSALLEDR FREHSTLNPK  120
QKVALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEFLK RCCETLTEEN RRLQRELQEL  180
RALKFAPPPP PPSAAAAHQP APAPFYMQLP AATLTICPSC ERVGAGPASA GDGTKSRPPT  240
THHFFNPFTH SAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298TRKKLRL
2142150RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G08410.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0977881e-123FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627844.11e-122homeobox-leucine zipper protein HOX19 isoform X2
SwissprotA2XE761e-123HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-123HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A0D9VRJ80.0A0A0D9VRJ8_9ORYZ; Uncharacterized protein
STRINGLPERR03G08410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-49HD-ZIP family protein