PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G08990.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 720aa    MW: 78814.2 Da    PI: 6.4592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G08990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-081456347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E++ + +a +q G++ +++I  +++  ++  q++++++ +
  LPERR03G08990.1 14 AWTRQEEQNFFNALRQVGKN-FEKITLRVQ-SKSKDQVRHYYYRL 56
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.47E-9960IPR009057Homeodomain-like
PROSITE profilePS5129313.1551061IPR017884SANT domain
SMARTSM007175.2E-71159IPR001005SANT/Myb domain
PfamPF002493.5E-71456IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-51463IPR009057Homeodomain-like
CDDcd001671.14E-61457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MSHVRSAPAR QWAAWTRQEE QNFFNALRQV GKNFEKITLR VQSKSKDQVR HYYYRLVRRM  60
KKLLGPEFSL DAKNSKDTIA AMLCWWSLLE KFSCSASKLH LKPRRFKTFV EALGNQLLKD  120
RNRTRKKCPR GDVCLSSSSS GLNRTPANES FSVKLLSVDV SNGSKVASSK GSFLKKVGEP  180
NCNNKSGATK GDLSATRTVK QKRRAGGVVA SAAYKKWERA AMAGVSLVAD AAEELERNTV  240
NVDARMLSPS SSNVCTVDGL GTNHIKEADQ QAPAKLKLQL FPINEATRKA LEKDEHNPHL  300
ELTLSARKKI SSVLEHLNRK WGSSNIASGE LLLFPYCAHQ EDLATYQRWT TKDTVAVADV  360
FLSVNSPSVF RLRYGWFSLA ELEAGVSEIS STHFENCLIP EDIHAKSPSE TCAQKDGTSL  420
GSCAPEQHPC SSKDQSALLL AIPSGTGKSA EMPEQCIDVP PSQFGRQNQE QVRANQVFEA  480
DLGMDCAAIS EGEWADTLTN ISVGYLLTEA SRGANTDCPG TSIGKNALLL ENPCSYDSFD  540
AAVALHASRY KSSEQSAVAS HLTIWGAEET CDAFSFNLAA SRKQEGSNNS ASSSPDSESD  600
VHPSNSEGFQ GFLQDLAAPD IADNSCIDDA KDIEALCAES PPQSDKDSAL KDQSLADLYW  660
PDSLGPLDLE IPPAKYHADD LLLGDNSQNS WNRMMANSLD AFRNLSFFTT EKNESIPSII
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G08990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026880.0AK102688.1 Oryza sativa Japonica Group cDNA clone:J033102O16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632626.10.0TSL-kinase interacting protein 1
RefseqXP_015632627.10.0TSL-kinase interacting protein 1
TrEMBLA0A0D9VRR30.0A0A0D9VRR3_9ORYZ; Uncharacterized protein
STRINGLPERR03G08990.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.31e-164TSL-kinase interacting protein 1