PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G10190.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 231aa    MW: 23973.6 Da    PI: 4.7915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G10190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76e-182877255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      ykGVr ++ +g+Wv+eIr p     +  +r++lg++ t+e Aa+a++aa ++l+g
  LPERR03G10190.1 28 PYKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALLCLKG 77
                     59****998.**********7.....335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.9182885IPR001471AP2/ERF domain
SMARTSM003804.8E-342891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-292887IPR001471AP2/ERF domain
PRINTSPR003675.1E-82940IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-192986IPR016177DNA-binding domain
PfamPF008474.5E-112977IPR001471AP2/ERF domain
CDDcd000185.68E-192987No hitNo description
PRINTSPR003675.1E-85167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVKNPSNKCG GGGGDGKRME AEAMTVRPYK GVRMRSWGSW VSEIRAPHQK RRIWLGSYAT  60
PEAAARAYDA ALLCLKGSDA VLNFPSSSSR RLDAAGDDSR GGDMSPRSIQ RVAAAAAAAF  120
DHAGVGVIVD DASCSSSGAE GMTSTSTMGS GGGGGDALEH AAATPSSSST AAANACSPTL  180
VEGDHELWTE LDAFASPKFM DLMAAGGTPF SSPWDQEPEE DGELMRLWSF C
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G10190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352064e-85AC135206.3 Oryza sativa Japonica Group chromosome 3 clone OJ1041F02, complete sequence.
GenBankAP0149594e-85AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126114e-85CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630150.15e-84ethylene-responsive transcription factor ERF013
TrEMBLA0A0D9VS791e-166A0A0D9VS79_9ORYZ; Uncharacterized protein
STRINGLPERR03G10190.11e-167(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.19e-28ERF family protein