PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G10210.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 580aa    MW: 61631.1 Da    PI: 4.8151
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G10210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2982.4e-911365302373
             GRAS   2 velLlecAeavss..gdlelaqalLarlselaspdgd........pmqRlaayfteALaarlarsvselykalppsetsekn.......sseel 78 
                       +lL+++  a+s   ++ ela+ +L rl+e++s + +        +m+Rla +ft AL+a l +s + + ++ ++ +++++          ++l
  LPERR03G10210.1 136 LHLLMAASGALSGphKSRELARVILVRLKEMVSHSHTgaanaaasNMERLAVHFTDALQALLDGSHPVTGRQASAAAAATTAaasqhhhAGDVL 229
                      6899999999987446777************877766678888889*****************9888776665444444333334455677788 PP

             GRAS  79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAe 170
                      +a+++++++sP++kf+h+taNqaIleav+g++rvHi+D+di +G+QW++L+qa++sR+   ++p+lRiT+v++ + g +++++e g+rL++fA+
  LPERR03G10210.1 230 TAFQMLQDMSPYMKFGHFTANQAILEAVAGDRRVHIVDYDIAEGIQWASLMQAMTSRAdgVPAPHLRITAVSR-SGGGARAVQEAGRRLSSFAA 322
                      88899*****************************************************666789*********.5569**************** PP

             GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe......adhnsesFlerfl 258
                      ++g pf+f     ++ e +++ + r+ +gE+l+ n+vl+  +        +    ++L+ +  l +k+v+vve+e      ad +s++F++rf+
  LPERR03G10210.1 323 SIGQPFSFGQCRLDSDERFRPATVRMVKGETLVANCVLHQATATTAIRRPTGSVASFLSGMAALGAKLVTVVEEEgesdkdADESSGDFVRRFM 416
                      **********9999***********************9776666444444447899******************9444433444555******* PP

             GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                      e l+ ysa+ dslea++p++s+ r  vEr++lg++i  +v+ + +  +   e    W e+++ +GF +vpls ++ +qa+lll  ++ dgy+ve
  LPERR03G10210.1 417 EELHRYSAVWDSLEAGFPTQSRVRGLVERVILGPNIAGAVSRAYRG-IDGGEGRCGWGEWMRGSGFAAVPLSCFNHSQARLLLGLFN-DGYTVE 508
                      ********************************************99.999999**********************************.****** PP

             GRAS 353 ee.sgslvlgWkdrpLvsvSaW 373
                      e   + +vlgWk r+L+s+S+W
  LPERR03G10210.1 509 ETgPNKIVLGWKARRLMSASVW 530
                      99457788************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.706109511IPR005202Transcription factor GRAS
PfamPF035148.4E-89136530IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MEVTMEDVPG DFEISGCGST TTTTTTSSTS SLDDGTGTMY ASWGELSPVA DWGNFCSDDG  60
VQEDLHGLIE SMLCDDTLVG DAGLDDHPVM FRDDVYCYSN GSNPGSTTTT NPGTPAFDVE  120
PPQNDDDCPE KGLRLLHLLM AASGALSGPH KSRELARVIL VRLKEMVSHS HTGAANAAAS  180
NMERLAVHFT DALQALLDGS HPVTGRQASA AAAATTAAAS QHHHAGDVLT AFQMLQDMSP  240
YMKFGHFTAN QAILEAVAGD RRVHIVDYDI AEGIQWASLM QAMTSRADGV PAPHLRITAV  300
SRSGGGARAV QEAGRRLSSF AASIGQPFSF GQCRLDSDER FRPATVRMVK GETLVANCVL  360
HQATATTAIR RPTGSVASFL SGMAALGAKL VTVVEEEGES DKDADESSGD FVRRFMEELH  420
RYSAVWDSLE AGFPTQSRVR GLVERVILGP NIAGAVSRAY RGIDGGEGRC GWGEWMRGSG  480
FAAVPLSCFN HSQARLLLGL FNDGYTVEET GPNKIVLGWK ARRLMSASVW APPPLPAPAS  540
PPEGVCQPVV GMAPAATGGF VRTEFDYIDS FLVEPAYALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-4718053254380Protein SCARECROW
5b3h_A4e-4718053253379Protein SCARECROW
5b3h_D4e-4718053253379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G10210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630025.10.0nodulation-signaling pathway 2 protein
TrEMBLA0A0D9VS810.0A0A0D9VS81_9ORYZ; Uncharacterized protein
STRINGLPERR03G10210.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-113GRAS family protein