PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G11200.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 191aa    MW: 19707.4 Da    PI: 7.9157
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G11200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00175577123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  LPERR03G11200.1 55 FECKTCNRQFPSFQALGGHRASH 77
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.57E-853122No hitNo description
PfamPF139126.5E-135479IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8275582IPR007087Zinc finger, C2H2
SMARTSM003550.165577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
PfamPF139124.2E-999124IPR007087Zinc finger, C2H2
SMARTSM003552.5100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAYGKRSRQQ ADEAAAFSLF DSSDMARILM LFAGAHGGGG GGGVVMASSA PERTFECKTC  60
NRQFPSFQAL GGHRASHKKP RLGDGGGDAD QPAAPKPKVH GCSICGLEFA VGQALGGHMR  120
RHRAVMSDGA LGLGLSLSLG VDDGGKKKKA AAAELVFDLN VPAALEEEPD RARTAAGIAA  180
VEFPIVVDFP C
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G11200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630125.14e-74zinc finger protein ZAT7
TrEMBLA0A0D9VSK91e-134A0A0D9VSK9_9ORYZ; Uncharacterized protein
STRINGLPERR03G11200.11e-134(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-26C2H2 family protein