PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G11720.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 248aa    MW: 26369.6 Da    PI: 7.1076
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G11720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.76e-36601701100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal...........peeeredamsslvyeAearardPvyGavgvilkl 83 
                      +CaaCk+lrr+Ca++Cvlapyfp ++p+kf  +h++FGasn++kll+a            pe+ reda+ss+vyeAearardPvyG++g + +l
  LPERR03G11720.1  60 PCAACKMLRRRCADGCVLAPYFPPTDPAKFSTAHRVFGASNIIKLLQARtslsrawgselPESAREDAVSSMVYEAEARARDPVYGCAGAVCRL 153
                      7*********************************************9863444444444466667***************************** PP

           DUF260  84 qqqleqlkaelallkee 100
                      q++ e+lk++la++++ 
  LPERR03G11720.1 154 QKEAEELKVQLARAQAD 170
                      ************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.33959171IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-3760168IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDAGSINTAA NVTVAQQPHY WLSVSPPSSA SSTCSSPPPP VLVGNTSSSS TSHGTVVLSP  60
CAACKMLRRR CADGCVLAPY FPPTDPAKFS TAHRVFGASN IIKLLQARTS LSRAWGSELP  120
ESAREDAVSS MVYEAEARAR DPVYGCAGAV CRLQKEAEEL KVQLARAQAD LLNAQAQHAN  180
LVALVCVELA ASSHSRHGHH QQLAADHALP LTPHHHPAEY GGGGAYQYYG QPLGCYDSAA  240
WDEPRLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-385917310113LOB family transfactor Ramosa2.1
5ly0_B3e-385917310113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G11720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370743e-89AC137074.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0022M22, from chromosome 3, complete sequence.
GenBankAK0725153e-89AK072515.1 Oryza sativa Japonica Group cDNA clone:J023131K07, full insert sequence.
GenBankAP0149593e-89AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126113e-89CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8321433e-89CT832143.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN027J24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649894.14e-90PREDICTED: LOB domain-containing protein 1
SwissprotQ9LQR06e-58LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A0D9VSS00.0A0A0D9VSS0_9ORYZ; Uncharacterized protein
STRINGLPERR03G11720.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-57LOB domain-containing protein 1