PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G12870.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 167aa MW: 18233.1 Da PI: 9.1425

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G12870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.9	2.6e-09	26	71	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + rk +NR++A++sR +K+++++ L+ ++++L eN+a + + LPERR03G12870.1 26 RQRNRKRSNRLSAQKSRMKKQQYVDGLAAEAEQLRRENDAVRAAAA 71 33447789*******************************9987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.2E-10	21	71	No hit	No description
SMART	SM00338	5.5E-11	21	86	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-6	24	69	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.622	24	67	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.05E-7	26	74	No hit	No description
CDD	cd14702	1.30E-10	27	64	No hit	No description
PROSITE pattern	PS00036	0	30	44	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MSVAPAPESG AARRAAAAAA AKEEERQRNR KRSNRLSAQK SRMKKQQYVD GLAAEAEQLR 60 RENDAVRAAA AASLRRCRLV EQENRALMTH ALQLRGSLLR LLGEVAGVPL DVPDVADHLV 120 QLYGGGLPMM PPLSGPPPLP PEIEMLLFQL QPDVMDAVSM LQDYVSM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G12870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC134769	2e-70	AC134769.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence.
GenBank	AK109929	2e-70	AK109929.1 Oryza sativa Japonica Group cDNA clone:002-151-H09, full insert sequence.
GenBank	AP014959	2e-70	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	2e-70	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631799.1	4e-60	ocs element-binding factor 1
TrEMBL	A0A0D9VT67	1e-113	A0A0D9VT67_9ORYZ; Uncharacterized protein
STRING	LPERR03G12870.1	1e-114	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12504	28	37