PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G13850.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

WOX

Protein Properties

Length: 361aa MW: 36583 Da PI: 8.6353

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G13850.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.4	3.3e-15	42	102	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ LPERR03G13850.1 42 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 102 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.6	1.6e-34	41	104	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q LPERR03G13850.1 41 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 104 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.256	38	103	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-14	39	110	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-6	40	107	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-8	42	109	IPR009057	Homeodomain-like
Pfam	PF00046	6.3E-13	42	102	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MEGSSNSPDR QSSGGSPEDQ RGGGGGGGGS GGGRGAGGEP VRSRWTPKPE QILILESIFN 60 SGMVNPPKDE TVRIRKLLER FGAVGDANVF YWFQNRRSRS RRRQRQMQAA AAAASAAAAA 120 SSGSSPSAPA SATASAATVV VGGGAVHHHH TMAAVMVGGG SACQYEQQAS SSSSSGSTGG 180 SSMGLFAHGA GTPGGGGVAG YLQASCGASA SSALAPAGLI GDVEIGGSDD LFAISRQMGF 240 VGSPRCSPAP SPATTPAAAA AQQQQFYSCQ LPAATITVFI NGVPMEVPRG PIDLRAMFGQ 300 DVMLVHSTGA LLPVNDYGIL IQSLQMGESY FLVTIHLQAS LVSSSLPISQ RSFLFMKAPH 360 L

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MEGSSNSPDR QSSGGSPEDQ RGGGGGGGGS GGGRGAGGEP VRSRWTPKPE QILILESIFN  60
SGMVNPPKDE TVRIRKLLER FGAVGDANVF YWFQNRRSRS RRRQRQMQAA AAAASAAAAA  120
SSGSSPSAPA SATASAATVV VGGGAVHHHH TMAAVMVGGG SACQYEQQAS SSSSSGSTGG  180
SSMGLFAHGA GTPGGGGVAG YLQASCGASA SSALAPAGLI GDVEIGGSDD LFAISRQMGF  240
VGSPRCSPAP SPATTPAAAA AQQQQFYSCQ LPAATITVFI NGVPMEVPRG PIDLRAMFGQ  300
DVMLVHSTGA LLPVNDYGIL IQSLQMGESY FLVTIHLQAS LVSSSLPISQ RSFLFMKAPH  360
L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	33	RGGGGGGGGSGGGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G13850.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111000	1e-166	AK111000.1 Oryza sativa Japonica Group cDNA clone:002-174-E11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629005.1	1e-126	WUSCHEL-related homeobox 6 isoform X1
Swissprot	A2XG77	1e-114	WOX6_ORYSI; WUSCHEL-related homeobox 6
Swissprot	Q10M29	1e-114	WOX6_ORYSJ; WUSCHEL-related homeobox 6
TrEMBL	A0A0D9VTJ0	0.0	A0A0D9VTJ0_9ORYZ; Uncharacterized protein
STRING	LPERR03G13850.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	3e-33	WUSCHEL related homeobox 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]