PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G14670.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 244aa    MW: 26360.4 Da    PI: 6.2749
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G14670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-1970119255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r+++ +g+W+AeIrdp   gk +r++lg+f tae Aa+a+++a+++++g
  LPERR03G14670.1  70 LYRGIRRRP-WGKWAAEIRDP---GKGARVWLGTFATAEAAARAYDRAARRIRG 119
                      69*******.**********8...545*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.95E-1669128No hitNo description
SMARTSM003802.6E-3870133IPR001471AP2/ERF domain
PROSITE profilePS5103224.38170127IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2270128IPR016177DNA-binding domain
PfamPF008473.2E-1370119IPR001471AP2/ERF domain
PRINTSPR003673.0E-117182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3171128IPR001471AP2/ERF domain
PRINTSPR003673.0E-1193109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MCGGAIPLSS GHAGGGGKRS LSATEDLWPQ NPASDEDFTT PVVLPEQGAD EEEEQQPAAR  60
RQRRGERRTL YRGIRRRPWG KWAAEIRDPG KGARVWLGTF ATAEAAARAY DRAARRIRGT  120
KAKVNFPNED YNAYAYAYAY APPPYHLASS SSSSSPTSYL YPAIQPPQQQ LVTMVDYGGD  180
AVVDVGYFQP PTYEYCPGVG GGVVVPVSAA AAAAPVMTYG HGQSQEVVAP PLMWNFDDIT  240
AMPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2271127663ATERF1
3gcc_A8e-2271127663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16277RRGERRTLYRGIRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G14670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1214916e-93AC121491.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0050D18, complete sequence.
GenBankAK1114146e-93AK111414.1 Oryza sativa Japonica Group cDNA clone:002-182-G01, full insert sequence.
GenBankAP0149596e-93AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126116e-93CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629983.14e-56ethylene-responsive transcription factor RAP2-3
TrEMBLA0A0D9VTU81e-177A0A0D9VTU8_9ORYZ; Uncharacterized protein
STRINGLPERR03G14670.11e-178(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169191010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.15e-13ERF family protein