PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G15710.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 168aa    MW: 19843.8 Da    PI: 10.2414
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G15710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.4e-1579167899
                      -HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
               B3   8 sdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                       +v +++++ +++k+a+ +       e+ tl++ +++g++W+v+++++kk +r +l+ GW +F+++n+L +gD+++F+l  + ++  ++v+++r
  LPERR03G15710.1  79 GYVINKNNVEFSRKYADLYlpF----EDETLVF-QRRGKTWNVRCCITKKNSRRILK-GWAQFARDNDLFVGDICLFELLVNnKKYVMKVHIIR 166
                      4666666677777777666432....2334554.669********995555555565.********************7755499999999999 PP

                      S CS
               B3  99 k 99 
                      k
  LPERR03G15710.1 167 K 167
                      7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.78772168IPR003340B3 DNA binding domain
SMARTSM010196.0E-972168IPR003340B3 DNA binding domain
CDDcd100175.98E-1677166No hitNo description
SuperFamilySSF1019361.55E-1779167IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-1480167IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-1983167IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSGSFYDIAM TNSQKEKKRR KRRDNANIPS SPVESSEDDL EWDLVPGCIA PRQNRLTHSQ  60
KKIMNEKTKE INSENHINGY VINKNNVEFS RKYADLYLPF EDETLVFQRR GKTWNVRCCI  120
TKKNSRRILK GWAQFARDND LFVGDICLFE LLVNNKKYVM KVHIIRKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11620KKRRK
21622KKRRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G15710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629587.16e-64putative B3 domain-containing protein Os03g0621600
SwissprotQ851V11e-65Y3160_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0D9VU831e-122A0A0D9VU83_9ORYZ; Uncharacterized protein
STRINGLPERR03G15710.11e-123(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-08B3 family protein