PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G16010.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HSF

Protein Properties

Length: 304aa MW: 33810.8 Da PI: 6.3904

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G16010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.6	5.3e-35	34	126	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d+++++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F+kg k+ll+ LPERR03G16010.1 34 FLSKTYQLVDDASTDHVVSWGEDEATFVVWRPPEFARDLLPSYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLLS 118 9**************************************************************999.........************* PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 +i+r+ks+ LPERR03G16010.1 119 EIHRRKSS 126 ***987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	8.3E-57	30	123	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.44E-33	30	123	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	6.4E-37	31	123	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.3E-30	34	123	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-19	34	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-19	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	73	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-19	85	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MAFLVERCGG GEMVVSMEGG SSAAAAAAVA PAPFLSKTYQ LVDDASTDHV VSWGEDEATF 60 VVWRPPEFAR DLLPSYFKHN NFSSFVRQLN TYGFRKIVAD RWEFANEFFR KGAKHLLSEI 120 HRRKSSSCSH PPPLHLPMHH PYHHLSLFSP PPPPTTTTTC PPFGAAAAHQ YFQLQEDQYY 180 CSSSPADVVT GGDLVAALSE DNRQLRRRNS LLLSELAHMR KLYNDIIYFL QNHVESAISP 240 SSVAGGAGCR LVELDPTSPE RRRGDDDDDA AVRLFGVRLD DHNEVGKKRR AKLVEGDEEQ 300 GSEV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1hks_A	2e-21	34	123	7	106	HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A	2e-21	34	123	7	106	HEAT-SHOCK TRANSCRIPTION FACTOR
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	286	291	KKRRAK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G16010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054148	1e-107	BT054148.1 Zea mays full-length cDNA clone ZM_BFb0133K13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015690966.1	1e-123	PREDICTED: heat stress transcription factor B-4d-like isoform X1
Refseq	XP_015690967.1	1e-123	PREDICTED: heat stress transcription factor B-4d-like isoform X1
Refseq	XP_015690968.1	1e-123	PREDICTED: heat stress transcription factor B-4d-like isoform X1
Refseq	XP_015690969.1	1e-123	PREDICTED: heat stress transcription factor B-4d-like isoform X1
Refseq	XP_015690970.1	1e-123	PREDICTED: heat stress transcription factor B-4d-like isoform X1
Refseq	XP_015690971.1	1e-123	PREDICTED: heat stress transcription factor B-4d-like isoform X1
Refseq	XP_015690972.1	1e-123	PREDICTED: heat stress transcription factor B-4d-like isoform X1
Refseq	XP_015690973.1	1e-123	PREDICTED: heat stress transcription factor B-4d-like isoform X1
Refseq	XP_015690974.1	1e-123	PREDICTED: heat stress transcription factor B-4d-like isoform X1
Refseq	XP_015690975.1	1e-123	PREDICTED: heat stress transcription factor B-4d-like isoform X2
Refseq	XP_015690976.1	1e-123	PREDICTED: heat stress transcription factor B-4d-like isoform X2
Swissprot	Q10KX8	1e-124	HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBL	A0A0D9VUC1	0.0	A0A0D9VUC1_9ORYZ; Uncharacterized protein
STRING	LPERR03G16010.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-71	heat shock transcription factor B4