PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G17060.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CAMTA
Protein Properties Length: 1021aa    MW: 114627 Da    PI: 6.3884
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G17060.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.51.7e-55211372118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ +krwl+++ei++iL n+++++l+ e+++rp sgsl+L++rk +ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++fq
  LPERR03G17060.3  21 LEAHKRWLRPTEICEILSNYRSFSLSPEPPNRPGSGSLFLFDRKTLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQ 114
                      55699***************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+ywlLee++++ivlvhylevk
  LPERR03G17060.3 115 RRTYWLLEENFTHIVLVHYLEVK 137
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.12116142IPR005559CG-1 DNA-binding domain
SMARTSM010769.8E-7519137IPR005559CG-1 DNA-binding domain
PfamPF038594.2E-4922136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.8E-7441527IPR013783Immunoglobulin-like fold
PfamPF018331.7E-6442525IPR002909IPT domain
SuperFamilySSF812968.6E-17442526IPR014756Immunoglobulin E-set
SuperFamilySSF484032.18E-17616731IPR020683Ankyrin repeat-containing domain
CDDcd002042.69E-14631729No hitNo description
Gene3DG3DSA:1.25.40.201.8E-18631732IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.059637731IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.763637669IPR002110Ankyrin repeat
PfamPF127961.3E-8642732IPR020683Ankyrin repeat-containing domain
SMARTSM002480.31670699IPR002110Ankyrin repeat
SMARTSM00248440709738IPR002110Ankyrin repeat
SuperFamilySSF525401.54E-8838895IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.045844866IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.773845874IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055846865IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0041867889IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.523869892IPR000048IQ motif, EF-hand binding site
PfamPF006123.1E-4870889IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1021 aa     Download sequence    Send to blast
MAETRKFVMP NQPPDISQMM LEAHKRWLRP TEICEILSNY RSFSLSPEPP NRPGSGSLFL  60
FDRKTLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEENFTHIVL VHYLEVKGAK QNYGRAKEEI MQLSGADSPS CSNSITSQNQ MAPPIMDAAE  180
SPISGQISEY EGAEPDNFRA SSRYHPLIEM QQPMDGIVMD SMLYPSASTI CNQGYHGDML  240
PGTSNLNSHL FTHNDIARMF DDSSTGLRDI SRTLFDSVPC DEPFSGYPNG FMEPTLHSSF  300
SMIEANNLED SSLLETFTSE ALYTNNLSQK EADALSFAGI SSSEVNGNKC TEGSTKHPLL  360
KQLSLDLFKI ESSGLKKHDS FSRWMSRELG EVVDLDIKSS SDAFWSSTEI VNAADGPSVP  420
ANGHLDAYVV SPSLSKDQLF SILDISPSCS YIGSKTKVLV TGTFLAENVE NCKWSCMFGD  480
VEVPAEVLAD GALRCFAPER QSGRVPFYVT CSNRIACSEV REFEYRDSDA QYLETSYSQT  540
HGINEMHLQI RLEKLLSLGP DDNHLLVCGH EKLELIEAIN SLMLDEKWSD QLSPSISKDV  600
TTPRNQSLKK LVKEKLHCWL ICKIKDCEKG PNVLGKEGQG VIHLAAALGY DWAIRPILVA  660
GVNVNFRDAH GWTALHWAAF CGRERTVSIL IANEAAAGAL TDPTSEFPSG RTPADLASTN  720
GHKGIAGFLA EAALTSHLSA LTIKDSKDSN VGESCGLTIA EYHPETNSAQ LPVEDSCVDP  780
LKDSLTAVRK STQAAARIFQ AFRVESFHRK KIVEYGYDDC GLSDEHTLSL ISLKNVKQGH  840
YDTHLHSAAV RIQNKFRGWK GRKEFMIVRQ RIVKIQAHVR GHQVRKSYKK VVWSVGIVEK  900
VILRWRRKRP GLRNFRTEKQ IECQSQIQPA KTEDEYDFLQ DGRRQAEARL QRALDRVRSM  960
TQYPEARDQY QRLTTCVAEM QQSKVMQDEM LSEAAGADVN DFMIGLEDLI CRDDAQMSAI  1020
W
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G17060.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631090.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLA0A0D9VUR70.0A0A0D9VUR7_9ORYZ; Uncharacterized protein
STRINGLPERR03G17060.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1