PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G17070.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB
Protein Properties Length: 310aa    MW: 33081.3 Da    PI: 7.7553
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G17070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.24e-181663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lvd+v+++G g+W++ +++ g++R+ k+c++rw +yl
  LPERR03G17070.1 16 KGPWTREEDQKLVDYVELHGHGSWRSLPKRAGLNRCCKSCRLRWINYL 63
                     79********************************************97 PP
2Myb_DNA-binding54.62.6e-1769112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE++ ++ ++  lG++ W+tIa +++ gRt++++k++w++
  LPERR03G17070.1  69 RGNFTPEEEQAIITLHSVLGNK-WSTIATRLP-GRTDNEIKNYWNT 112
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-25766IPR009057Homeodomain-like
PROSITE profilePS5129418.2671163IPR017930Myb domain
SuperFamilySSF466891.87E-3113110IPR009057Homeodomain-like
SMARTSM007171.9E-151565IPR001005SANT/Myb domain
PfamPF002492.1E-161663IPR001005SANT/Myb domain
CDDcd001676.58E-131863No hitNo description
PROSITE profilePS5129426.74264118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2767118IPR009057Homeodomain-like
SMARTSM007174.3E-1668116IPR001005SANT/Myb domain
PfamPF002492.4E-1569112IPR001005SANT/Myb domain
CDDcd001673.04E-1271114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRLRPPCCD ESSVKKGPWT REEDQKLVDY VELHGHGSWR SLPKRAGLNR CCKSCRLRWI  60
NYLRPDIKRG NFTPEEEQAI ITLHSVLGNK WSTIATRLPG RTDNEIKNYW NTRLKKRLIV  120
AGIDPATHRA RARPPAPADL AAALPQLVAL ASLAVDLAVG HAGAAAAWGA NSAALDFHAA  180
DNTAAQLQCL QHLLLQQQQP TPATSATSGD MNTASCSFLV NQYAAAAATN PLPLPPLMAA  240
SNTQAHELKR WQDLVGNDGG GCGDHHGAGV SPPFAGGDGG EGGMFLPSDL TALLCSANST  300
ADLQSSNLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28161187108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G17070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631094.11e-128transcription factor MYB93
SwissprotQ9S9Z27e-74MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0D9VUR80.0A0A0D9VUR8_9ORYZ; Uncharacterized protein
STRINGLPERR03G17070.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP180181010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-68myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]