PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G18020.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 506aa    MW: 52359.8 Da    PI: 7.1212
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G18020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS186.91.3e-571265032374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                      ++lL  cA a ++g+++++q+l   l el+s +gd+++Rlaa+ ++AL++rl      l+   pps ++   + + + a  + f+e+sP++ + 
  LPERR03G18020.1 126 EQLLNPCAAAADAGNMSRVQHLFYVLAELQSFTGDANHRLAAHGLRALSRRLPAIRLPLSFPSPPSFSA--AEPRLFRASLIrFHELSPWFALP 217
                      689**************************************************9555555433333333..333333333337*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvl 181
                      + ++N aI   +++++ +H++D+++s+G+QWp+Ll++L+ +p  + pps+RiT+vg+ +++      + +       L ++A+++g+++ +   
  LPERR03G18020.1 218 NALTNAAISA-AATSRPIHVVDIGVSHGVQWPTLLESLTRQPggRAPPSVRITVVGDGAASpapfaAAPAGYYFSPHLLRYAKSIGLDLAIAR- 309
                      ********75.567899*************************656699********9887788889888999999**************9997. PP

             GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.....sFlerflealeyysalfds 270
                         + +   ++ L++  +Eal+V+l+++l +        ++er+e+L+ v++l P++vv++e + +  ++       + +f+  le+ + +++s
  LPERR03G18020.1 310 ---AGDIDAVRGLATGGEEALVVCLQFRLGHAG------ADERREILRKVRGLGPELVVLSELDFSAAAGgggggGVAGEFAARLEMLWRFLES 394
                      ...56666779*****************99998......455789*******************554222234449****************** PP

             GRAS 271 leaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee......... 354
                      ++a +  ++ eer+ +E+e  g ++ ++ a+  a           Wrer+ +aGF++++++ +a+++ak+llrk++  g+++            
  LPERR03G18020.1 395 TSAAFKGKDaEERRLMEAE-AGTSLADATAADVAV---AGDGRDGWRERMAAAGFEEAAFGAEAVESAKSLLRKYD-SGWEMSTPppatasggg 483
                      *666655544999999999.999999999998887...6677789*******************************.66777754556677775 PP

             GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                       g++ l Wk++p+ ++S Wr
  LPERR03G18020.1 484 GGAVALRWKGQPVSFCSLWR 503
                      66777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.45799475IPR005202Transcription factor GRAS
PfamPF035144.6E-55126503IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MKEIMNYHAT SSNNGLDWFD DSISSFLAAD ADADAAGGGY AWWAASPVTH QDDIGSVVAQ  60
TLSPPASAAP AATSPLAQSA SPTIASSPSS SSKKRKSPAH GGGGGKKGGG GGKGGSSSER  120
EMRWAEQLLN PCAAAADAGN MSRVQHLFYV LAELQSFTGD ANHRLAAHGL RALSRRLPAI  180
RLPLSFPSPP SFSAAEPRLF RASLIRFHEL SPWFALPNAL TNAAISAAAT SRPIHVVDIG  240
VSHGVQWPTL LESLTRQPGG RAPPSVRITV VGDGAASPAP FAAAPAGYYF SPHLLRYAKS  300
IGLDLAIARA GDIDAVRGLA TGGEEALVVC LQFRLGHAGA DERREILRKV RGLGPELVVL  360
SELDFSAAAG GGGGGGVAGE FAARLEMLWR FLESTSAAFK GKDAEERRLM EAEAGTSLAD  420
ATAADVAVAG DGRDGWRERM AAAGFEEAAF GAEAVESAKS LLRKYDSGWE MSTPPPATAS  480
GGGGGAVALR WKGQPVSFCS LWRPAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-2512350585475Protein SHORT-ROOT
5b3h_B5e-2612350531421Protein SHORT-ROOT
5b3h_E5e-2612350531421Protein SHORT-ROOT
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111GGKKGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G18020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704558.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A0D9VV570.0A0A0D9VV57_9ORYZ; Uncharacterized protein
STRINGLPERR03G18020.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.13e-75GRAS family protein