PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G20680.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GRAS

Protein Properties

Length: 734aa MW: 83920 Da PI: 6.9609

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G20680.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	325.6	9.5e-100	354	726	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+avs ++++la+ +L+ ++++asp+gd qRla +++ L rla+++s++y+++ +++ + ++ l++++l +P+++ s LPERR03G20680.1 354 LRTLLIHCAQAVSVSNHSLASDILKIIRHHASPTGDDSQRLALCLAYCLDVRLAGTGSQIYHKFITKRRN---AVDILKVFHLCITKCPFMRAS 444 6789*******************************************************999888887...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 h N++Il+a +g+++vHiiDf+i G+QWp+L+++La+ ++ p +lRiTg++ pe+g + ++tg rL+++A+ +++pfe++ ++++++ LPERR03G20680.1 445 HYFSNRTILDASKGKSQVHIIDFGICFGFQWPSLFEQLANIEDRPGKLRITGIELPEAGfrPYAMSKNTGLRLSDYAKMFNIPFEYQHIASDKW 538 *****************************************************99999999********************999 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e+l++e+++++++E+l+Vn++ +++ l de+ s++s+r++vL+ ++ ++Pkv+v +++ + Fl+rf e +++y++lfd+l++++pr++e LPERR03G20680.1 539 ETLSPEDFNIEKDEMLIVNCINRMKDLGDETISINSARNRVLNNIRMMKPKVFVQGVLSGSYGVPFFLTRFKEVMYHYASLFDMLDKTIPRDNE 632 ******************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+ +Er + + nv+aceg er+er e+++kW+ r +aG+ ++pl+ +ak+ + ++rk + + + veee+++lvlgWk+r +++S W+ LPERR03G20680.1 633 TRTIIERDIYQYIMLNVIACEGPERIERPESYKKWKVRNVKAGLVQLPLNLVIAKETQDMVRKGYHKDFLVEEEDQWLVLGWKGRITYAISTWK 726 ****999999**********************************************9888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.581	328	706	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-97	354	726	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MGSSDRAKVN NFHVVMANGP GNDAYSNEEP VNLASRSNDS ELYLYPACPM NYYAPLSVVS 60 EKDDHVASRT SFSQINHSQL YEDNRHTKAN MCQTSVGDYP EKSIINSDIT LSYIDKMLMQ 120 EDIDDRGNED TALQAMEEPF YELLGQNYPV LPQQQPLYGC SHLHNFSVNT DSSNGQSCNI 180 CSVTRMTNTS SSINFSENFQ GFKFPWSLSA ITRGTEQISH HSNRTDVGLK VDDLSLSEKP 240 RQDNCSLHLN MRYIRKQPLF EVRDRKTYPC IEDLDLLEGR SNKQYAIYSD EPIRDEMFDK 300 VLLCSENKPL DGGISLSKTT TNNPIKSSQI GQGNTSARQK TRDKRTQKRD VVDLRTLLIH 360 CAQAVSVSNH SLASDILKII RHHASPTGDD SQRLALCLAY CLDVRLAGTG SQIYHKFITK 420 RRNAVDILKV FHLCITKCPF MRASHYFSNR TILDASKGKS QVHIIDFGIC FGFQWPSLFE 480 QLANIEDRPG KLRITGIELP EAGFRPYAMS KNTGLRLSDY AKMFNIPFEY QHIASDKWET 540 LSPEDFNIEK DEMLIVNCIN RMKDLGDETI SINSARNRVL NNIRMMKPKV FVQGVLSGSY 600 GVPFFLTRFK EVMYHYASLF DMLDKTIPRD NETRTIIERD IYQYIMLNVI ACEGPERIER 660 PESYKKWKVR NVKAGLVQLP LNLVIAKETQ DMVRKGYHKD FLVEEEDQWL VLGWKGRITY 720 AISTWKLNDS DHGD

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MGSSDRAKVN NFHVVMANGP GNDAYSNEEP VNLASRSNDS ELYLYPACPM NYYAPLSVVS  60
EKDDHVASRT SFSQINHSQL YEDNRHTKAN MCQTSVGDYP EKSIINSDIT LSYIDKMLMQ  120
EDIDDRGNED TALQAMEEPF YELLGQNYPV LPQQQPLYGC SHLHNFSVNT DSSNGQSCNI  180
CSVTRMTNTS SSINFSENFQ GFKFPWSLSA ITRGTEQISH HSNRTDVGLK VDDLSLSEKP  240
RQDNCSLHLN MRYIRKQPLF EVRDRKTYPC IEDLDLLEGR SNKQYAIYSD EPIRDEMFDK  300
VLLCSENKPL DGGISLSKTT TNNPIKSSQI GQGNTSARQK TRDKRTQKRD VVDLRTLLIH  360
CAQAVSVSNH SLASDILKII RHHASPTGDD SQRLALCLAY CLDVRLAGTG SQIYHKFITK  420
RRNAVDILKV FHLCITKCPF MRASHYFSNR TILDASKGKS QVHIIDFGIC FGFQWPSLFE  480
QLANIEDRPG KLRITGIELP EAGFRPYAMS KNTGLRLSDY AKMFNIPFEY QHIASDKWET  540
LSPEDFNIEK DEMLIVNCIN RMKDLGDETI SINSARNRVL NNIRMMKPKV FVQGVLSGSY  600
GVPFFLTRFK EVMYHYASLF DMLDKTIPRD NETRTIIERD IYQYIMLNVI ACEGPERIER  660
PESYKKWKVR NVKAGLVQLP LNLVIAKETQ DMVRKGYHKD FLVEEEDQWL VLGWKGRITY  720
AISTWKLNDS DHGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-44	358	726	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G20680.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024313379.1	0.0	scarecrow-like protein 9
TrEMBL	A0A0D9VW26	0.0	A0A0D9VW26_9ORYZ; Uncharacterized protein
STRING	LPERR03G20680.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-139	GRAS family protein