PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21380.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 175aa    MW: 19279.9 Da    PI: 8.7547
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.1e-1910871598
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     r ++p kfa+++g k   + +++l+  +g++ +v +   k+s++ vlt+GW  Fv+++++k gDf+vF+++++s+f  +vk+f 
  LPERR03G21380.1 10 RRTIPHKFAQNFGDK--IQGMIKLKACNGNTCSVLV--AKCSEKLVLTAGWAAFVRSHDIKIGDFLVFRYISNSQF--KVKIFG 87
                     469******766655..4449***************..**********************************9*99..999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.998189IPR003340B3 DNA binding domain
SMARTSM010192.6E-6789IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-211091IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-191086No hitNo description
PfamPF023621.7E-161086IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-211191IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MATAASFFLR RTIPHKFAQN FGDKIQGMIK LKACNGNTCS VLVAKCSEKL VLTAGWAAFV  60
RSHDIKIGDF LVFRYISNSQ FKVKIFGPSG CVKASSHNAA KVAHDVQNMQ GDLIGISSSS  120
DNNLLKQWLT TERQNELEMD GTDNCNEKMK TENAFSSKDD QETPAASGYV LSRTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879561.19e-73putative B3 domain-containing protein Os03g0621600 isoform X5
SwissprotQ851V56e-68Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0D9VWB31e-128A0A0D9VWB3_9ORYZ; Uncharacterized protein
STRINGLPERR03G21380.11e-129(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-12B3 family protein