PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21480.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 202aa    MW: 21273.3 Da    PI: 9.13
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000296284123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cgk Fs+   L  H  +H
  LPERR03G21480.1 62 HRCSVCGKAFSSYQALGGHKTSH 84
                     79**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.1E-45985IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.03E-96184No hitNo description
PfamPF139122.5E-126286IPR007087Zinc finger, C2H2
SMARTSM003550.0186284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.8636289IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-9118145No hitNo description
PfamPF139123.4E-14122147IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349123145IPR007087Zinc finger, C2H2
SMARTSM003550.12123145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVDIMMSPPA SGEEGQMGWS KRRRSRRHGR APAPPTEEEH LALSLLMLAR GHRDPASPEQ  60
QHRCSVCGKA FSSYQALGGH KTSHRPKTPP TATTAPAIVV DAPAAATASP AASSSNSGGN  120
RVHECSVCKK TFPTGQALGG HKRCHYEGPI GAAAAVAGRV FDLNLPAVEV MTDRCLLPAA  180
AGEEDEVLSP LAFKKPRLMI PA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629276.11e-65zinc finger protein 1
SwissprotQ424302e-43ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0D9VWC51e-145A0A0D9VWC5_9ORYZ; Uncharacterized protein
STRINGLPERR03G21480.11e-146(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-34C2H2 family protein