PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G21700.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Dof

Protein Properties

Length: 261aa MW: 26628.2 Da PI: 9.6212

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G21700.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.9	3e-35	50	103	6	59
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +cprC s++tkfCyynny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ LPERR03G21700.1 50 EQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRP 103 68*************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.6E-31	50	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.559	50	104	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-23	51	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MAAGGGALLL PPPPPPHHSF KHDVTDMQMQ AATGSCLQPP ASSGGGGGRE QCPRCASHDT 60 KFCYYNNYNT SQPRHFCRAC RRYWTLGGSL RNVPIGGSTR KRPRPPLRRP PVHFAATVGA 120 REYPQAAPAP APSVATASQQ QAGLLGSLFA LGAAPLLEGA RVGFDLGLGL PGPGGANAVA 180 DVAAAGFHGL GGQSRGGGIL PTTMTTSSAM LWPTGLLDGT TTTNNVETWK LAAGGGAAMW 240 PEFSAAAAQQ GGLMHGGAQL L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	104	KRPRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G21700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	2e-81	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153027.1	2e-72	dof zinc finger protein DOF3.1-like
Refseq	XP_020171952.1	2e-72	dof zinc finger protein DOF3.1-like
TrEMBL	A0A0D9VWF1	0.0	A0A0D9VWF1_9ORYZ; Uncharacterized protein
STRING	LPERR03G21700.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-25	DOF zinc finger protein 1