PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21720.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 1105aa    MW: 124220 Da    PI: 9.4206
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21720.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.2e-131232031197
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       +++ ++lp kfa+++gg+   s t++l+ ++   + v++  + + +++vl+ GW+ Fv a++++e+D + F++ g+s+f   v ++
  LPERR03G21720.2 123 DSRRSMILPDKFANHFGGN--ISGTIKLQAPNCILYVVEV--TVCMNKTVLKCGWEAFVAAHRIEENDYLFFSHLGNSRF--EVLIL 203
                      456679*******888988..6779***********9*99..999999****************************9999..66655 PP
2B335.61.6e-113274101598
                      -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
               B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                      +lv+  ++a+ h   ++es+ +tl+   ++++W  ++  r+ ++  +l++ W+ Fv++n+++e+D++vF  +++  +f ++v+++r
  LPERR03G21720.2 327 LLVIASRYAALHF--PHESRNVTLQRpCKSKKWHPTFYKRNEKSINILRGYWSYFVQDNRVQENDICVFVPTKDaGNFIFTVHLLR 410
                      5899999999997..446778999995677*******445555559************************9988899988888877 PP
3B347.23.9e-155356092196
                      HH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  21 kfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++a++  ++ ++  + +l  +sg++W   + + + +s r +l +GW++Fv++n+L++gD+++F+l+ r++++l++ v
  LPERR03G21720.2 535 QYAAAVHLPDRR--QTVLLERSGKRWATVMHVnNARSTRRFLINGWSRFVRDNRLRVGDICLFELKTRERKKLTMAV 609
                      555555555444..4777888*****999977555555566777*********************977776666544 PP
4B341.72.1e-13641724798
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++d+++s  ++lp ++++++ggk   + t++le+++g  + v++    + +++vl+ GW+ Fv+a+++k++ +++F+++++s+f   v +++
  LPERR03G21720.2 641 TADSMRS--MILPSRYVNHFGGK--FPGTIKLESPNGILYVVEV--IEYMNKTVLQCGWEAFVDAHRIKQNNSLLFRHIENSRF--EVLILD 724
                      4555554..8*******888999..6669***************..999999***************************99999..666655 PP
5B346.37.4e-158339161699
                      EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      lv++ ++a+ h   ++es t+tl+ +s  ++W  k+  rk +  ++l++ Wk+Fv++n L+e D+++F  ++  ++f+++v+++r+
  LPERR03G21720.2 833 LVISSRYASVHF--PRESATITLQMPSKrKKWHPKFYKRKDKTDHMLRGQWKNFVHDNCLQEEDICLFAPTKGgRNFTFTVHLLRA 916
                      799999999997..568889***9966659******66777778*************************886669**999999986 PP
6B331.82.5e-10105811004297
                       TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97  
                       +g  W++k+            +GW++Fv++n+L +gDf++F+l++ ++ ++ v+++
  LPERR03G21720.2 1058 KGMIWQIKY------------DGWRKFVHDNRLHVGDFCLFELKE-KKLTMEVHII 1100
                       444444444............8********************976.8888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-19111208IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-16113208IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.955113206IPR003340B3 DNA binding domain
CDDcd100171.00E-14115204No hitNo description
SMARTSM010193.4E-6116206IPR003340B3 DNA binding domain
PfamPF023621.7E-11124202IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-17304411IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-16305411IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.11312412IPR003340B3 DNA binding domain
CDDcd100177.45E-14312407No hitNo description
PROSITE profilePS5086310.884313412IPR003340B3 DNA binding domain
PfamPF023625.4E-9327411IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-18504611IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-16505611IPR015300DNA-binding pseudobarrel domain
CDDcd100173.66E-14510610No hitNo description
SMARTSM010190.0031517616IPR003340B3 DNA binding domain
PfamPF023624.3E-13531609IPR003340B3 DNA binding domain
PROSITE profilePS5086312.238549613IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-19631728IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.505633726IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-16633726IPR015300DNA-binding pseudobarrel domain
CDDcd100172.13E-15635724No hitNo description
SMARTSM010192.0E-9636726IPR003340B3 DNA binding domain
PfamPF023622.3E-11640722IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-19810916IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-20810916IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0011817917IPR003340B3 DNA binding domain
CDDcd100171.53E-19817915No hitNo description
PROSITE profilePS5086310.898818917IPR003340B3 DNA binding domain
PfamPF023622.7E-13833916IPR003340B3 DNA binding domain
SuperFamilySSF1019361.75E-1210101100IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.03310151103IPR003340B3 DNA binding domain
CDDcd100179.79E-1510281100No hitNo description
Gene3DG3DSA:2.40.330.102.2E-1210301100IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-810581100IPR003340B3 DNA binding domain
PROSITE profilePS508638.92410681103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1105 aa     Download sequence    Send to blast
MHFGSLSITR QWGPRVSPLL SSSSSSTLPP NLSVCLGGVA ITGCRRRRPS VAADAAVEWD  60
APRTPHGRHG LVRRLNHPLF RVGNSVEMAG SGSRMKKSCD CCQTYLGHLG GKMNCFLRRM  120
TADSRRSMIL PDKFANHFGG NISGTIKLQA PNCILYVVEV TVCMNKTVLK CGWEAFVAAH  180
RIEENDYLFF SHLGNSRFEV LILDSDGCEK VFSCTGIKNN CSMKEKSVDA VSISSSSCDD  240
TVQSSESEGF ARYQKGSFSR KDSPSEHESV DSGDLQTSQE PYTLSRFSYL SDVQKERVDA  300
LIQKIQPKIT VFVAIMRKSN VQLPAPLLVI ASRYAALHFP HESRNVTLQR PCKSKKWHPT  360
FYKRNEKSIN ILRGYWSYFV QDNRVQENDI CVFVPTKDAG NFIFTVHLLR AAATYSMGGT  420
GVDRIGSSVG ITHAMKSSSD IIVKEEPIEA DDVSLENSRN GVSDESVESE DTEGPADPPC  480
IVPSASKSRL SSLQKNIVNE KVKSIQSKVP IYVAVMNKTN IGLSSCRSQL EFGAQYAAAV  540
HLPDRRQTVL LERSGKRWAT VMHVNNARST RRFLINGWSR FVRDNRLRVG DICLFELKTR  600
ERKKLTMAVH TISSKQSLAP VAKNTWNIWG GKMSYFLRQM TADSMRSMIL PSRYVNHFGG  660
KFPGTIKLES PNGILYVVEV IEYMNKTVLQ CGWEAFVDAH RIKQNNSLLF RHIENSRFEV  720
LILDTDDCEK VFSCAGIKNS SCAHDKAVDP ADISGSSRDD TEQSSRSERS TRCKMDIFND  780
HKNNVNWTEV SSSSEELAQK ERVVAHIKDI QPQITVFVAV MKKCNLQSPA PYLVISSRYA  840
SVHFPRESAT ITLQMPSKRK KWHPKFYKRK DKTDHMLRGQ WKNFVHDNCL QEEDICLFAP  900
TKGGRNFTFT VHLLRAAATH STGGTDICKI GSNHNGMNAN MASQVHLKEE PDDGENVSSE  960
SDKHGVSHES QESKDSASPS EPPYILSRAR HQLSQWQKKK VEAKVRAIQS KFPIYVAIIG  1020
RISGGDGYGR ICQLELGSRY AAAHLPDTNH QTVVLQCKGM IWQIKYDGWR KFVHDNRLHV  1080
GDFCLFELKE KKLTMEVHII FNLRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21720.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651606.10.0PREDICTED: B3 domain-containing protein Os03g0619600-like
SwissprotQ6AV220.0Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A0D9VWF40.0A0A0D9VWF4_9ORYZ; Uncharacterized protein
STRINGLPERR03G21720.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-16B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]