PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21760.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 546aa    MW: 61513.6 Da    PI: 8.9643
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21760.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.3e-14571341497
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +  ++p+kf++++gg+     t+ le+++  ++ vk+  +k+ +r+vl  GW  Fv+an+++e+D++ F+++++s+f   v ++
  LPERR03G21760.3  57 CVKIIPNKFLDHFGGE--ILATIELESPRVIVYIVKV--TKHMNRTVLNCGWGAFVDANQIEENDSLFFRHIENSRF--EVLIL 134
                      5669******888877..6789***************..*********************************99999..66665 PP
2B361.81.1e-19242338499
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 
                      v++ s+v  +g lv+ k++a++h  +  +s+t+tle+++  ++W  k+ +rk +++y+l + W eFv++n+LkegD+++F+l+  + ++f+ +v
  LPERR03G21760.3 242 VMKYSNVKLRGSLVIAKHYASAHFPN--TSQTITLESRDKnKKWHPKFYIRKDRSGYILYGRWTEFVHDNRLKEGDICIFELTkFTgRNFRATV 333
                      6777999999*************855..6789*****6655*******88999999*************************8855568888888 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      +++r+
  LPERR03G21760.3 334 HLLRE 338
                      88775 PP
3B345.71.2e-144595421599
                      -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                       +++ k+fa+++       e++   l+  +++ W++k+  + +sg   ++t  W+ Fv++n L+ +D+++F+l+++ ++ +++v+++r+
  LPERR03G21760.3 459 TIRFGKEFATRYlpR---GEQTLTLLMKGKSKAWQIKM--CPRSGDaQMFTMDWRAFVHDNCLRIKDICLFQLMNNeRRLTMTVHIIRH 542
                      356679999999542...2333445566799*******..666655599*************************998*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-1657141IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-457137IPR003340B3 DNA binding domain
PfamPF023621.1E-1259133IPR003340B3 DNA binding domain
CDDcd100172.43E-1260135No hitNo description
PROSITE profilePS5086310.20760137IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-1560139IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.8E-23231339IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-23234335IPR015300DNA-binding pseudobarrel domain
CDDcd100176.12E-23237337No hitNo description
SMARTSM010193.4E-12239339IPR003340B3 DNA binding domain
PROSITE profilePS5086313.747239339IPR003340B3 DNA binding domain
PfamPF023622.0E-18240338IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18435543IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-16436543IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-11441541No hitNo description
SMARTSM010190.0037443543IPR003340B3 DNA binding domain
PROSITE profilePS5086310.01445543IPR003340B3 DNA binding domain
PfamPF023621.7E-13459542IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MPTRRQRQWA ELRSSRGLAA SSFSNGVASA SARPRGSAGF FSPGLITTRH QLAELLCVKI  60
IPNKFLDHFG GEILATIELE SPRVIVYIVK VTKHMNRTVL NCGWGAFVDA NQIEENDSLF  120
FRHIENSRFE VLILDSDGCE KIFSRSGIKR AYNVQERNAD PIDIASSTHD NDTMDSSSSG  180
ESGEEFTESG SSEHESCHEL DDPQTPLVPV LSHGTSLSEA QEEKIAMLIQ EIRPEIPVYV  240
AVMKYSNVKL RGSLVIAKHY ASAHFPNTSQ TITLESRDKN KKWHPKFYIR KDRSGYILYG  300
RWTEFVHDNR LKEGDICIFE LTKFTGRNFR ATVHLLRETK SHSFGAFCSS PKRVDSGGRT  360
RPRVSLTEGR CGTKGISTNS VKKEPDDGQC NKGEGKHQEP LSSDDSGGSS ESYLISQKAS  420
LTKAQKRKVK EIACSYESEV PIYASVMNKS NVGTDGSYTI RFGKEFATRY LPRGEQTLTL  480
LMKGKSKAWQ IKMCPRSGDA QMFTMDWRAF VHDNCLRIKD ICLFQLMNNE RRLTMTVHII  540
RHNDKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21760.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021696e-92AK102169.1 Oryza sativa Japonica Group cDNA clone:J033086H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630232.20.0LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
SwissprotQ851W50.0Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A0D9VWG10.0A0A0D9VWG1_9ORYZ; Uncharacterized protein
STRINGLPERR03G21760.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-16B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]