PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21860.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 215aa    MW: 22821.8 Da    PI: 10.777
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.21.8e-28108157251
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                      pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ
  LPERR03G21860.1 108 PRMRWTTALHAHFVQAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 157
                      9************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.3E-14105159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-25105158IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-21108157IPR006447Myb domain, plants
PfamPF002491.9E-6109157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MATTATAPDL SLHISPPSAA DMAGRSGGGG EMEQLAEPKL CLGFDMVATQ HNGGCSLQQQ  60
QQRLHQPSQI QRFKKSAIGS PVLSGGGGNG GAARSGNGGG GKRSSRAPRM RWTTALHAHF  120
VQAVELLGGH ERATPKSVLE LMNVKDLTLA HVKSHLQASH GYMRDMGFLR TGGGEMDGFD  180
VLGNTSSIAI TNIRSSHQER AIRNKERRIV GLNHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-14109157351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-14109157351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-14109157351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-14109157351Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690532.15e-73PREDICTED: two-component response regulator ARR1-like
SwissprotQ9FJV54e-31KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A0D9VWH41e-156A0A0D9VWH4_9ORYZ; Uncharacterized protein
STRINGLPERR03G21860.11e-156(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.21e-27G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]