PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G22350.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 219aa    MW: 23430.9 Da    PI: 7.5075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G22350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-1267111554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  Av YI +L
  LPERR03G22350.1  67 HVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAVAYIADL 111
                      889**********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.26562111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-1267115No hitNo description
Gene3DG3DSA:4.10.280.108.0E-1567123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1567124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-1067111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-1068117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDELVSPYSS SSSSFLAMVE LDVCEQWLVD DAWASHSPVS SDPAAAAAKT TRRRGRKAAA  60
GGPIIGHVEA ERQRREKLNR RFCDLRAAVP TVSRMDKASL LADAVAYIAD LRRRIDCLEA  120
EAKKGAAAHV AVAPDGLEIM MVGQEAASVR LTTTASQMQH APARMMCALR ALGLAVQHAS  180
VTRVASGATV QDVMVDVPSA LQDEGCLRAA LLLMLRHDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1965121763Transcription factor MYC2
5gnj_B5e-1965121763Transcription factor MYC2
5gnj_E5e-1965121763Transcription factor MYC2
5gnj_F5e-1965121763Transcription factor MYC2
5gnj_G5e-1965121763Transcription factor MYC2
5gnj_I5e-1965121763Transcription factor MYC2
5gnj_M5e-1965121763Transcription factor MYC2
5gnj_N5e-1965121763Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G22350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0065253e-45AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.
GenBankAP0072543e-45AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBankAP0149653e-45AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126173e-45CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974086.21e-63transcription factor MYC2
TrEMBLA0A0D9VWN51e-154A0A0D9VWN5_9ORYZ; Uncharacterized protein
STRINGLPERR03G22350.11e-155(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.19e-22bHLH family protein