PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G22400.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

CPP

Protein Properties

Length: 608aa MW: 65887.6 Da PI: 6.9675

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G22400.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	27.7	5.6e-09	368	395	15	42
TCR 15 kkYCeCfaagkkCseeCkCedCkNkeek 42 k+YC Cfaa+++Cs +C+C +C+N++++ LPERR03G22400.1 368 KRYCACFAAKVYCSGSCSCRGCFNNHSH 395 99**********************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	12.072	359	448	IPR005172	CRC domain
SMART	SM01114	1.4E-4	361	395	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.2E-5	368	392	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence Send to blast
MDPPGTPPAP PPAAGAGAAA DATSKDSPVF NFIENLPPIA ASKRLDAIPN GQLFKSSDLA 60 QTSSIFTSPQ LNSTKGSKIS IRNTSAQLSQ EGMSPYYHMT PIGTSSHIKL SGPATIASEN 120 CSIDRSLSQA NNYSPVNASV FPNSFPQHIE TSTDTLVSDK RQNTTGKADH AAAQKHAKVS 180 CFDHNGLDNM EQSISGTELY IDENIACNQN YLSTQCGSII VPTSDLTFQT EALLADTPKT 240 NNVMPRVSLL PITEANLENS RSRLFHGSAD CYVNSAVDIA HDYCTSQGKG VAANYVSGIP 300 FYQPQSQLVP DHQFCDTLEV PIDYMAMNHN HLASNTNKMN THPQNDCSSQ ATMPTNAGSS 360 GEENPKRKRY CACFAAKVYC SGSCSCRGCF NNHSHEETVL STRIQIESRN PLAFAPKVTR 420 AFGPGMEFGS GVGCSMSCRC ESCKNDFGIR KDTKEIEQVG QKKKAHPKEE QPEMGKHHAF 480 AETSVVLPTI SLSTTPSIES IRTLPLPASE CFNRLLSSPR TSQLYPPSNT DGWYPSGTYT 540 EMILGNDQSD MQHGDSSCIA SFKLLTPNKK RVSPLRTGNG LSPTCRSDKL RKYMPFRSLA 600 SDFNSELQ

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence Send to blast

MDPPGTPPAP PPAAGAGAAA DATSKDSPVF NFIENLPPIA ASKRLDAIPN GQLFKSSDLA  60
QTSSIFTSPQ LNSTKGSKIS IRNTSAQLSQ EGMSPYYHMT PIGTSSHIKL SGPATIASEN  120
CSIDRSLSQA NNYSPVNASV FPNSFPQHIE TSTDTLVSDK RQNTTGKADH AAAQKHAKVS  180
CFDHNGLDNM EQSISGTELY IDENIACNQN YLSTQCGSII VPTSDLTFQT EALLADTPKT  240
NNVMPRVSLL PITEANLENS RSRLFHGSAD CYVNSAVDIA HDYCTSQGKG VAANYVSGIP  300
FYQPQSQLVP DHQFCDTLEV PIDYMAMNHN HLASNTNKMN THPQNDCSSQ ATMPTNAGSS  360
GEENPKRKRY CACFAAKVYC SGSCSCRGCF NNHSHEETVL STRIQIESRN PLAFAPKVTR  420
AFGPGMEFGS GVGCSMSCRC ESCKNDFGIR KDTKEIEQVG QKKKAHPKEE QPEMGKHHAF  480
AETSVVLPTI SLSTTPSIES IRTLPLPASE CFNRLLSSPR TSQLYPPSNT DGWYPSGTYT  540
EMILGNDQSD MQHGDSSCIA SFKLLTPNKK RVSPLRTGNG LSPTCRSDKL RKYMPFRSLA  600
SDFNSELQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G22400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015689982.1	0.0	PREDICTED: uncharacterized protein LOC102721153
TrEMBL	A0A0D9VWP0	0.0	A0A0D9VWP0_9ORYZ; Uncharacterized protein
STRING	LPERR03G22400.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14774	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	3e-24	Tesmin/TSO1-like CXC domain-containing protein