PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G22460.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

LSD

Protein Properties

Length: 189aa MW: 20289.2 Da PI: 8.4106

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G22460.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.3	1.2e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L+YP GApsV+CalC+++ LPERR03G22460.2 7 CHGCRSVLRYPSGAPSVCCALCQAI 31 ***********************97 PP
2	zf-LSD1	48.9	1.1e-15	93	116	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ LPERR03G22460.2 93 CGQCRTTLMYPYGAPSVKCAICHY 116 **********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.3E-12	4	34	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.1E-10	7	31	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	5.4E-12	90	118	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.3E-14	93	117	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MQSQIVCHGC RSVLRYPSGA PSVCCALCQA ITTVPPPAPE KSPLIFNSIS SNPDSSHIFY 60 SIGNGSSNMW WLPNIADVYS QCRHLNNIAH VSCGQCRTTL MYPYGAPSVK CAICHYITNT 120 GMNTMAPTPS PMPTSSGSSY NAPSTSVPTS RSQNVTVVVE NPMTVDEKGK LVSPPKTRLY 180 TTNISSLLN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G22460.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111569	4e-72	AK111569.1 Oryza sativa Japonica Group cDNA clone:J013071E13, full insert sequence.
GenBank	CT830679	4e-72	CT830679.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA116O15, full insert sequence.
GenBank	KP940472	4e-72	KP940472.1 Oryza sativa cultivar Zixuan1 C2C2-zinc finger LSD1-like transcription factor (LSD3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006650331.1	1e-77	PREDICTED: protein LOL3
Refseq	XP_015690721.1	1e-77	PREDICTED: protein LOL3
Swissprot	Q6ASS2	1e-76	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A0D9VWQ2	1e-134	A0A0D9VWQ2_9ORYZ; Uncharacterized protein
STRING	LPERR03G22460.1	2e-92	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	6e-28	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]