PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G22960.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family YABBY
Protein Properties Length: 193aa    MW: 21984.1 Da    PI: 9.7665
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G22960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY231.52e-7181685170
            YABBY   5 ssseqvCyvqCnfCntila.....vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                       ++e+vCyv+CnfCntila     vsvPs+s++++vtvrCGhCtsllsvnl+   q l+a+++       + +e lk+++ ++++n++++ s+s
  LPERR03G22960.1   8 PAPEHVCYVHCNFCNTILAyryprVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSLPAVED-------PFQESLKMHNISFRENYSEYGSSS 94 
                      579***************8777789***********************************996.......899********************* PP

            YABBY  94 tsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      ++ ++ ++ s+n+  ++ +    +r PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl
  LPERR03G22960.1  95 KYGRVPMMfSRNDPGHMLH----VRTPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 168
                      ****999879999999997....899**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-6710168IPR006780YABBY protein
SuperFamilySSF470952.36E-8111162IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.8E-5114162IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSAQIALPAP EHVCYVHCNF CNTILAYRYP RVSVPSNSML NIVTVRCGHC TSLLSVNLRG  60
LIQSLPAVED PFQESLKMHN ISFRENYSEY GSSSKYGRVP MMFSRNDPGH MLHVRTPEKR  120
QRVPSAYNRF IKEEIRRIKA NNPDISHREA FSTAAKNWAH FPNIHFGLGS HESSKKLDEA  180
IGAPSPQKIQ RLY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G22960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740140.0AB274014.1 Oryza sativa Japonica Group OsYABBY2 mRNA for OsYABBY2 protein, complete cds.
GenBankAF0987530.0AF098753.1 Oryza sativa clone FIL2 unknown mRNA.
GenBankAK0704790.0AK070479.1 Oryza sativa Japonica Group cDNA clone:J023050P10, full insert sequence.
GenBankEU8469820.0EU846982.1 Oryza sativa Japonica Group clone KCS205G10 YABBY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880111.11e-122protein YABBY 2
SwissprotQ10FZ71e-123YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A0D9VWY31e-142A0A0D9VWY3_9ORYZ; Uncharacterized protein
STRINGLPERR03G22960.11e-143(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-56YABBY family protein