PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G24050.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 328aa    MW: 34498.7 Da    PI: 6.9023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G24050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.51.6e-15127173455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  Av+Y+k+Lq
  LPERR03G24050.1 127 EHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDAVRYVKELQ 173
                      699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-18115184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.406123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-13126173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-19127184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.53E-15128177No hitNo description
SMARTSM003532.6E-16129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEDSSLFMEW AMETLQHLHP PPPPPSAGGY GGGGADTFPS LQALRESASQ NGMAPPEPAA  60
HEGHRATNSW SSGDTDSPSN EVATARNVPA ARAPAVSPPT RRASAKGGAG GGGGGTGSSS  120
SAPYAQEHII AERKRREKIN QRFIELSTVI PGLKKMDKAT ILSDAVRYVK ELQEKLSELE  180
DQNGRSVESA VLVKKPCIAA ASDGRPSSPA TVAGSSSSSG SCRRSLPEIE AKISHGNLMV  240
RIHCENGKGL LVRLLAEVEG LHLAITHTNV MPFPACTAII TIMAKVEDGF SVTAEDIVGR  300
LNAVLQQHHS RNSAEEKTSC QQQEAATC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136ERKRRE
2132137RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G24050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690010.11e-147PREDICTED: transcription factor bHLH25-like
TrEMBLA0A0D9VXA10.0A0A0D9VXA1_9ORYZ; Uncharacterized protein
STRINGLPERR03G24050.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-43bHLH family protein