PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G24420.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 336aa    MW: 36056.4 Da    PI: 5.0331
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G24420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.12.9e-082743062254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ++yp+ +e+  LA  +gL+ +q+++WF N R +
  LPERR03G24420.1 274 HPYPNDNEKLMLAVTTGLSRTQISNWFINARVR 306
                      89*****************************88 PP
2BELL49.88.8e-17138201972
             BELL   9 kakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +akLlsll e++ r+++y  +l  v + Fe + g  + + Yt+l  +a+SrhF +L+ ai  ++
  LPERR03G24420.1 138 QAKLLSLLSELESRHEHYFGELCRVSAVFEPALGGAATAAYTALMARAMSRHFANLRRAILRKL 201
                      58**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.2E-979199IPR006563POX domain
PfamPF075262.6E-2185197IPR006563POX domain
PROSITE profilePS5007111.224247310IPR001356Homeobox domain
CDDcd000865.40E-11250311No hitNo description
SMARTSM003894.5E-9250314IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.9E-26255316IPR009057Homeodomain-like
SuperFamilySSF466893.38E-17256318IPR009057Homeodomain-like
PfamPF059203.1E-17267306IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVATKQLHSH HQLCGDAQCH LRHRPVIAAG AESCCGAGPL VLLTLASGGA AAVEDGNGHG  60
GGCCCSCAGA AAAAAPQPAT MVSALRSSRY LLPAQELLRE AVSMEEVAAA DDDDGHDEAM  120
REAGDRARAA ANTAGGVQAK LLSLLSELES RHEHYFGELC RVSAVFEPAL GGAATAAYTA  180
LMARAMSRHF ANLRRAILRK LTLHAAASRR PAFLRLAQVE DDEDDGEEEE DEDEDEVVDR  240
VVRRTKQAAW RPLRGLPEDS VAVLRAWLFD HFLHPYPNDN EKLMLAVTTG LSRTQISNWF  300
INARVRLWKP MVEEMYNDEF SDDSADIGGG GGASSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16256314563Homeobox protein Meis2
3k2a_B4e-16256314563Homeobox protein Meis2
4xrm_A3e-16256314563Homeobox protein Meis2
4xrm_B3e-16256314563Homeobox protein Meis2
5bng_A3e-16256314159Homeobox protein Meis2
5bng_B3e-16256314159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G24420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646651e-103AK064665.1 Oryza sativa Japonica Group cDNA clone:002-115-B07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879418.11e-110BEL1-like homeodomain protein 11
TrEMBLA0A0D9VXF70.0A0A0D9VXF7_9ORYZ; Uncharacterized protein
STRINGLPERR03G24420.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-39BEL1-like homeodomain 11