PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G24620.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GATA
Protein Properties Length: 181aa    MW: 19964.7 Da    PI: 10.3361
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G24620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.73.9e-14104140135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nCgt++  Tp +Rrgp g++tL naCGl+++ kg+
  LPERR03G24620.1 104 CQNCGTSEkmTPAMRRGPAGPRTLYNACGLMWANKGT 140
                      **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062033.0E-123272IPR010402CCT domain
PROSITE profilePS5101711.8763274IPR010402CCT domain
SMARTSM004011.6E-698151IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.8E-8101148No hitNo description
CDDcd002023.04E-13103158No hitNo description
Gene3DG3DSA:3.30.50.104.8E-13103142IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.2E-12104140IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MPPGLANLVS PNQLENRGYD DLLQRTDIPA KRVASLIRFR EKRKERNFDK KIRHAVRKEV  60
ALRMQRRKCQ FAGTANMEGE SLSPGCDPAS RGSGQDFPSR DSECQNCGTS EKMTPAMRRG  120
PAGPRTLYNA CGLMWANKGT LRSYPKAKVE SSVGATEQSI IDNKVLVVPN TGNITANNVE  180
A
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G24620.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1050251e-174AK105025.2 Oryza sativa Japonica Group cDNA clone:001-011-G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628049.11e-104GATA transcription factor 18
SwissprotA2XKR71e-105GAT18_ORYSI; GATA transcription factor 18
SwissprotQ10F251e-105GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A0D9VXI71e-132A0A0D9VXI7_9ORYZ; Uncharacterized protein
STRINGLPERR03G24620.11e-133(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-45ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]