PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G26000.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 625aa    MW: 65410.2 Da    PI: 5.003
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G26000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.63.8e-1402406211374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPil 91 
                      lv++Ll+cAeav+++++++a+al++++ +la+++g +m+++aayf eALa+r++r        ++p +++     ++++a+ l   f+e +P+l
  LPERR03G26000.1 240 LVHALLACAEAVQQENFAAAEALVKQIPTLAASQGGAMRKVAAYFGEALARRVYR--------FRPADST---LLDAAFADLLhahFYESCPYL 322
                      689****************************************************........5565555...3333333333334******** PP

             GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      kf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ lva +
  LPERR03G26000.1 323 KFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAAT 416
                      ********************************************************************************************** PP

             GRAS 186 ledleleeL....rvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                      l+dle+ +L    +         E++aVn+v++lhrll+++++le+    vL +v  ++P++v+vveqea+hns+sF++rf+e+l+yys++fds
  LPERR03G26000.1 417 LADLEPFMLqpdcE--AdandePEVIAVNSVFELHRLLAQPGALEK----VLGTVHAVRPRIVTVVEQEANHNSGSFVDRFTESLHYYSTMFDS 504
                      *********66441..2556679***********************....******************************************** PP

             GRAS 271 leak...........lpres....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
                      le +                     +++++++++lgr+i+nvvacegaer+erhetl++Wr+rl++aGF+pv+l+++a+kqa++ll+ ++ +dg
  LPERR03G26000.1 505 LEGGssgqaelsppaT---GgnggGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAgGDG 595
                      *888789999866541...144579********************************************************************* PP

             GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                      yrvee++g+l+lgW++rpL+++SaWr
  LPERR03G26000.1 596 YRVEEKEGCLTLGWHTRPLIATSAWR 621
                      *************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.8E-3138119No hitNo description
PfamPF120414.4E-3438113IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.48214600IPR005202Transcription factor GRAS
PfamPF035141.3E-137240621IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MKREYQDAGG SGSGSSAAGG GVADMGSCKA AGEEEDVDEM LAALGYKVRA SDMADVAHKL  60
EQLEMAMGMG GVSAPGAADD GFVSHLATDT VHYNPSDLSS WVESMLSELN APPPPLPPTP  120
AAPRHASTSS TVTGGGGSGF LVDLPPAVDS SSSSYALRPI PAPVVATADP SADSARDTKR  180
MRTGGGSTSS SSSSSSSLGG AASRGSVVEA APPATQATAA ANAPPVPVVV VDTQEAGIRL  240
VHALLACAEA VQQENFAAAE ALVKQIPTLA ASQGGAMRKV AAYFGEALAR RVYRFRPADS  300
TLLDAAFADL LHAHFYESCP YLKFAHFTAN QAILEAFAGC RRVHVVDFGI KQGMQWPALL  360
QALALRPGGP PSFRLTGVGP PQPDETDALQ QVGWKLAQFA HTIRVDFQYR GLVAATLADL  420
EPFMLQPDCE ADANDEPEVI AVNSVFELHR LLAQPGALEK VLGTVHAVRP RIVTVVEQEA  480
NHNSGSFVDR FTESLHYYST MFDSLEGGSS GQAELSPPAT GGNGGGTDQV MSEVYLGRQI  540
CNVVACEGAE RTERHETLGQ WRNRLGRAGF EPVHLGSNAY KQASTLLALF AGGDGYRVEE  600
KEGCLTLGWH TRPLIATSAW RVAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-5924762026378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. In contrast, its overexpression prevents the GA signaling pathway and induces a dwarf phenotype. {ECO:0000250|UniProtKB:Q7G7J6}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G26000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0309560.0AB030956.1 Oryza sativa Japonica Group mRNA for OsGAI, complete cds.
GenBankAB2629800.0AB262980.1 Oryza sativa Japonica Group SLR1 gene for DELLA protein, complete cds.
GenBankAC0877970.0AC087797.5 Oryza sativa chromosome 3 BAC OSJNBb0022E02 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650473.10.0PREDICTED: DELLA protein SLR1
SwissprotQ2TN880.0SLR1_ORYSI; DELLA protein SLR1
TrEMBLA0A0D9VY070.0A0A0D9VY07_9ORYZ; Uncharacterized protein
STRINGLPERR03G26000.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein