PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G26720.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ZF-HD
Protein Properties Length: 232aa    MW: 24345.1 Da    PI: 8.0312
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G26720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer833.4e-261159457
      ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                      +Y+eCl+NhAa+lG++a DGC+E++ps     + + l CaACgCHRnFHR+++
  LPERR03G26720.1 11 EVYRECLRNHAAKLGTYANDGCCEYTPS-----DDSLLICAACGCHRNFHRKSP 59
                     68*************************9.....34579**************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.2E-211258IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-161357IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.6721358IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.0E-201358IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.51E-1696173IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-27100174IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-26111172IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDQQQQERPR EVYRECLRNH AAKLGTYAND GCCEYTPSDD SLLICAACGC HRNFHRKSPF  60
PDAAAVSPHA APPMLPSPGP PPPGYMHHPH HMAAAMGGGG GDGSGGSSGR RRTRTKFTEE  120
QKARMLRFAE RLGWRMPKRE PGRAPGDDDV ARFCREIGVN RQVFKVWMHN HKAGVGGSGG  180
GGGGGGGGAQ TSSSTTRGGG SGGGGDLGVG LSPVMGGDGE DDEEVRGSEM CM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A8e-171101721773ZF-HD homeobox family protein
1wh7_A8e-171111721873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G26720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0915327e-99AC091532.14 Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence.
GenBankAP0149597e-99AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126117e-99CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168474.14e-93zinc-finger homeodomain protein 11-like
SwissprotA2XLF44e-93ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV54e-93ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A0D9VY961e-167A0A0D9VY96_9ORYZ; Uncharacterized protein
STRINGLPERR03G26720.11e-168(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-30homeobox protein 22