PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G27310.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 370aa    MW: 41196.2 Da    PI: 6.884
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G27310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.3e-092933311755
                      HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      el +k +yps++++  LA+++gL+ +q+ +WF N+R ++
  LPERR03G27310.1 293 ELHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRH 331
                      5666789*****************************885 PP
2ELK37.16.9e-13251272122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+Ll+KYsgyL+sLkqE+s
  LPERR03G27310.1 251 ELKHHLLKKYSGYLSSLKQELS 272
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.3E-18109153IPR005540KNOX1
PfamPF037901.4E-19111151IPR005540KNOX1
SMARTSM012569.2E-27162213IPR005541KNOX2
PfamPF037913.3E-22168211IPR005541KNOX2
SMARTSM011881500171191IPR005539ELK domain
PfamPF037898.4E-10251272IPR005539ELK domain
PROSITE profilePS5121311.331251271IPR005539ELK domain
SMARTSM011884.9E-7251272IPR005539ELK domain
PROSITE profilePS5007112.584271334IPR001356Homeobox domain
SuperFamilySSF466893.04E-19272347IPR009057Homeodomain-like
SMARTSM003891.2E-12273338IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.0E-28276335IPR009057Homeodomain-like
CDDcd000861.60E-11283335No hitNo description
PfamPF059203.1E-16291330IPR008422Homeobox KN domain
PROSITE patternPS000270309332IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEEISHHFGL GASGHGGHHH HHHQQQQQQQ QQQHHHHHPW ASSLSAVVAP PPPQQQSQAV  60
TMAHTPLTLS TAAAGGNPVL QLANGSLLDA CGKAKEASAS ASFAAVDVEE IKAKIISHPH  120
YSSLLAAYLD CQKAWAPPEV AARLTAVAQD LELRQRTALG GGLGAAATEP ELDQFMEAYQ  180
EMLVKYREEL TRPLQEAMEF LRRVETQLNT LSISGRSLRN ILSSGSSEED QEGSGGETEL  240
PEIDAHGVDQ ELKHHLLKKY SGYLSSLKQE LSKKKKKGKL PKDARQQLLS WWELHYKWPY  300
PSESQKVALA ESTGLDLKQI NNWFINQRKR HWKPSDEMQF VMMDGYHPTN AAAFYMDGHF  360
INDAGLYRLG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates genes involved in development. May be involved in shoot formation during embryogenesis. Overexpression in transgenic plants causes altered leaf morphology (PubMed:10488233, PubMed:8755613, PubMed:9869405). Regulates anther dehiscence via direct repression of the auxin biosynthetic gene YUCCA4 (PubMed:29915329). Binds to the DNA sequence 5'-TGAC-3' in the promoter of the YUCCA4 gene and represses its activity during anther development (PubMed:29915329). Reduction of auxin levels at late stage of anther development, after meiosis of microspore mother cells, is necessary for normal anther dehiscence and seed setting (PubMed:29915329). {ECO:0000269|PubMed:10488233, ECO:0000269|PubMed:29915329, ECO:0000269|PubMed:8755613, ECO:0000269|PubMed:9869405}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G27310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402060.0FJ940206.1 Oryza sativa Japonica Group clone KCB522D03 homeobox protein mRNA, complete cds.
GenBankRICOSH10.0D16507.1 Oryza sativa Japonica Group OSH1 mRNA for homeobox protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629392.10.0homeobox protein knotted-1-like 6
SwissprotP466090.0KNOS6_ORYSJ; Homeobox protein knotted-1-like 6
TrEMBLA0A0D9VYH80.0A0A0D9VYH8_9ORYZ; Uncharacterized protein
STRINGLPERR03G27310.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98863145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.18e-94KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Song S, et al.
    OsFTIP7 determines auxin-mediated anther dehiscence in rice.
    Nat Plants, 2018. 4(7): p. 495-504
    [PMID:29915329]