PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G27340.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 246aa    MW: 28553.5 Da    PI: 6.1142
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G27340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-091461802155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      + +yps+ e+  LA+++gL+++q+ +WF N+R ++
  LPERR03G27340.1 146 RWPYPSEMEKIALAESTGLEQKQINNWFINQRKRH 180
                      669*****************************885 PP
2ELK33.87.3e-12100121122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK++Ll+KYsg+LgsL++E+s
  LPERR03G27340.1 100 ELKRHLLKKYSGHLGSLRKELS 121
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012562.1E-18152IPR005541KNOX2
PfamPF037914.0E-18650IPR005541KNOX2
PfamPF037893.5E-9100121IPR005539ELK domain
PROSITE profilePS5121311.191100120IPR005539ELK domain
SMARTSM011881.7E-6100121IPR005539ELK domain
PROSITE profilePS5007112.892120183IPR001356Homeobox domain
SuperFamilySSF466895.56E-19121192IPR009057Homeodomain-like
SMARTSM003891.5E-12122187IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-27125185IPR009057Homeodomain-like
CDDcd000867.95E-12132184No hitNo description
PfamPF059202.6E-16140179IPR008422Homeobox KN domain
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MPAATAPDPE LDQFMEDYCK LLVDWKDELR KPLQEAEEFL RTVELELNSI KSGPPFSALI  60
SEDKAGFASS DDENEDGSGM EMEAAEDETI GIDPRSDDKE LKRHLLKKYS GHLGSLRKEL  120
SKKKKKGKLP KEARQKLLTW WELHYRWPYP SEMEKIALAE STGLEQKQIN NWFINQRKRH  180
WKPSEEMQFA VMEAYHHQCQ WRRDVLCRCP PLGSGGSSIG FVYPARSWRV AHIALIDLPL  240
HYQELI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G27340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0716640.0AB071664.1 Oryza sativa Indica Group mRNA for transcription factor OSH3, complete cds, cultivar:IR24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651769.11e-109PREDICTED: homeobox protein knotted-1-like 7
SwissprotQ948L52e-97KNOS7_ORYSJ; Homeobox protein knotted-1-like 7
TrEMBLA0A0D9VYI00.0A0A0D9VYI0_9ORYZ; Uncharacterized protein
STRINGLPERR03G27340.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150631819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-69KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y,Aoki Y,Matsuoka M
    A loss-of-function mutation in the rice KNOX type homeobox gene, OSH3.
    Plant Cell Physiol., 2002. 43(1): p. 44-51
    [PMID:11828021]
  2. Sato Y,Fukuda Y,Hirano HY
    Mutations that cause amino acid substitutions at the invariant positions in homeodomain of OSH3 KNOX protein suggest artificial selection during rice domestication.
    Genes Genet. Syst., 2001. 76(6): p. 381-92
    [PMID:11922107]