PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G27630.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 232aa    MW: 26172.4 Da    PI: 7.4331
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G27630.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.84.9e-101281651954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  LPERR03G27630.2 128 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 165
                      665559******************************98 PP
2BELL93.81.6e-305591872
             BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                     +Vd+rY++y++q+q+v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+
  LPERR03G27630.2  5 QVDRRYNHYCDQMQMVVNFFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIAAQL 59
                     7***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.0E-5157IPR006563POX domain
PfamPF075261.2E-27356IPR006563POX domain
PROSITE profilePS5007112.6106169IPR001356Homeobox domain
SMARTSM003891.6E-9109173IPR001356Homeobox domain
CDDcd000866.46E-13109170No hitNo description
SuperFamilySSF466894.19E-18110176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-29112175IPR009057Homeodomain-like
PfamPF059207.7E-19126165IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSMMQVDRRY NHYCDQMQMV VNFFDSVMGF GAATPYTALA QKAMSRHFRC LKDAIAAQLR  60
HTCELLGEKD AGTSSGLTKG ETPRLRAIDQ SLRQQRAFHH MGIMEQEAWR PQRGLPERSV  120
NILRSWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM IEEMYQQECK  180
EFDGSSSAAA AAGDDPSGAG DDTHSPTTTG AAQHHQHRLE HGGASHGFSC DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-17115173563Homeobox protein Meis2
4xrm_B1e-17115173563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G27630.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874760.0AK287476.1 Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981881.11e-142BEL1-like homeodomain protein 4
RefseqXP_015690056.11e-142PREDICTED: LOW QUALITY PROTEIN: BEL1-like homeodomain protein 4
SwissprotQ94KL51e-109BLH4_ARATH; BEL1-like homeodomain protein 4
SwissprotQ9SW801e-109BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A0D9VYM21e-175A0A0D9VYM2_9ORYZ; Uncharacterized protein
STRINGLPERR03G27630.11e-166(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-111BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]