PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G28140.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 294aa MW: 32442.2 Da PI: 6.6139

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G28140.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.4e-08	127	171	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L ++ ++ K +K +i++ A YI++L LPERR03G28140.1 127 HMMRERQRREKLSQSYADLYAMVSSR-----SKGDKNSIVQSAAIYIHEL 171 889********************8.....6999999*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.738	122	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-12	122	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.48E-7	126	172	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-9	127	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-5	127	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-5	128	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MQMESYYGAF HDEAAFFFPH HGVMAPASPE LPFGLIASPE PSPPPPSETR HGAFQDYAGA 60 MPVMGGGGGT NIHRRVLDVL GRMGTAGAGA AVAGERGIEE EEEEEEPRRR RGNGQGGDVE 120 SSRGFRHMMR ERQRREKLSQ SYADLYAMVS SRSKGDKNSI VQSAAIYIHE LKGARDQLQR 180 RNEELKAKIM GHDEQQQCVK VQFEVDQPTS SIDSMIGALR RLKSMNVKAR GIRSSLSGNR 240 LRTEMNVETT IAASEVERAV EEALNEVGRN QLDSDAPFPG SRGWTQTSHV QNVF

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G28140.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071734	0.0	AK071734.1 Oryza sativa Japonica Group cDNA clone:J023108N23, full insert sequence.
GenBank	HQ858871	0.0	HQ858871.1 Oryza sativa Japonica Group isolate UT1684 bHLH transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631231.1	1e-143	transcription factor BHLH148
Swissprot	Q75KV9	1e-144	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	A0A0D9VYT4	0.0	A0A0D9VYT4_9ORYZ; Uncharacterized protein
STRING	LPERR03G28140.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	2e-21	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]