PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G28150.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 393aa    MW: 42553.3 Da    PI: 10.5119
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G28150.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31327385259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  LPERR03G28150.2 327 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 385
                      69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.5E-17280324IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.4E-34314386IPR003657WRKY domain
PROSITE profilePS5081129.757321387IPR003657WRKY domain
SuperFamilySSF1182908.76E-27324385IPR003657WRKY domain
SMARTSM007742.5E-38326386IPR003657WRKY domain
PfamPF031068.7E-27328384IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEGMEQSNRE AVESCHRVLT LLSSPHSQLV PNKDLAAATG EAVAKFGSVT SRLNNGNCLN  60
NGNGLQGHAR VRKIKKPLPI FDSNLFLESS AATAATAAKT SNPSPITSLQ LFPRYHQMEG  120
SSSKDPVRIP AQFPKRLLLD NPVVDSDGPS RGLPLQLVQP VSVAPPAGTP PPALPSAHLH  180
FIQQQQSYQR FQLLQQMKMQ SEMIKRSGLG EQGGSTGGGK GVNLKFDSSN CTASSSRSFL  240
SSLSMEGSIA SLDGSRSSRP FQLVSGSQTS STPELGLMQR RRCTGREDGS GRCTTGSRCH  300
CSKKRKLRIR RSIKVPAISN KVADIPADEF SWRKYGQKPI KGSPHPRGYY KCSSVRGCPA  360
RKHVERCVDD PSMLIVTYEG DHNHNRVLAA QPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-20314385272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G28150.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218380.0AK121838.1 Oryza sativa Japonica Group cDNA clone:J033100L17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632919.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A0D9VYT60.0A0A0D9VYT6_9ORYZ; Uncharacterized protein
STRINGLPERR03G28150.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-52WRKY DNA-binding protein 21