PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G29330.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 420aa    MW: 44790.4 Da    PI: 6.5569
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G29330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.95e-29194250259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+ k++e prsYY+Ct  gCpvkk vers+ d+ + eitY+g+H+h+
  LPERR03G29330.1 194 KDGYNWRKYGQKQLKDAESPRSYYKCTRDGCPVKKIVERSS-DGCIKEITYKGRHTHP 250
                      8****************************************.***************8 PP
2WRKY103.21.5e-32318376159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYGqK+vkg++ prsYY+Ct  gC+v+k++er++ dpk+v +tY+g+Hnh+
  LPERR03G29330.1 318 LDDGFRWRKYGQKVVKGNPRPRSYYKCTADGCNVRKQIERASADPKCVLTTYTGRHNHD 376
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-26186250IPR003657WRKY domain
PROSITE profilePS5081121.115188252IPR003657WRKY domain
SuperFamilySSF1182903.01E-23191251IPR003657WRKY domain
SMARTSM007741.6E-31193251IPR003657WRKY domain
PfamPF031061.8E-22194250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-33303378IPR003657WRKY domain
SuperFamilySSF1182901.15E-27311378IPR003657WRKY domain
PROSITE profilePS5081135.622313378IPR003657WRKY domain
SMARTSM007742.6E-36318377IPR003657WRKY domain
PfamPF031062.2E-24319376IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MADRRGGGGD GMRQPPSFSS AAQERVFDGG GGVPGQVASY GSDFDQSSYM ALLAAAAGAG  60
AGGPQPPAWD VDEDVAAASP GISLTPQFSM ANYATPSYQH QLPLAGAGAG NLQPYPLQYL  120
QALDAPPQWP PPRPTPSSSS TLHPPPPPPN FTVFAAPPHE HHHHHHHQSM QHLLFRGGVQ  180
AQAAAAVTIE QPAKDGYNWR KYGQKQLKDA ESPRSYYKCT RDGCPVKKIV ERSSDGCIKE  240
ITYKGRHTHP RLGGGDNAGA DIAGGEVDEE EPSDDEMLHE DDGDGEEGHD RGAEGETGQR  300
VVRKPKIILQ TPSEVDLLDD GFRWRKYGQK VVKGNPRPRS YYKCTADGCN VRKQIERASA  360
DPKCVLTTYT GRHNHDPPGR TAGAGSSGNV QMPGPAMNLD GGGGTAQQLG GGVRQMKEET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-33195378877Probable WRKY transcription factor 4
2lex_A3e-33195378877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G29330.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418481e-107AY341848.1 Oryza sativa (japonica cultivar-group) WRKY7 mRNA, complete cds.
GenBankAY3418521e-107AY341852.1 Oryza sativa (japonica cultivar-group) WRKY11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630965.11e-142probable WRKY transcription factor 58
SwissprotQ9ZQ704e-64WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0D9VZ980.0A0A0D9VZ98_9ORYZ; Uncharacterized protein
STRINGLPERR03G29330.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.22e-52WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]