PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G29370.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 300aa    MW: 31709.7 Da    PI: 7.9223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G29370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.31.8e-05148191654
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      n+r r RR+++ +++  L++l+ +      +K + a++L +A  YI+ L
  LPERR03G29370.1 148 NKRPRVRREKLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 191
                      99**********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.716142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-12145204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-5148196No hitNo description
Gene3DG3DSA:4.10.280.105.2E-8148200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-5148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVKEEEIVTE AAGARGYMEL LGLGDQEADY LMCMSPSFYL SSPTASTTTV VASPTPYHQL  60
LSFAGQDQYH GGDVLGFQYY GGDHVIPAIV PQKSSPTAEC SSSISSMSSS PTATGAISSS  120
KPQAFKKKGP RGCDQRKTTA PAAATPTNKR PRVRREKLGE RIIALQQLVS PFGKSDTASV  180
LHEALGYIRF LHDQVQVLSS PYMQRLPPSA RVPVQQSEEQ QQRPNGGDLR SRGLCLVPVS  240
CTEHVTGGDT GHGHGNGADL WAVAAGMAKA TATVTAAVER SKEAAAAALL RGDLPGQQLA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G29370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728330.0AK072833.1 Oryza sativa Japonica Group cDNA clone:J023136C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690492.11e-159PREDICTED: transcription factor bHLH110-like
RefseqXP_015690493.11e-159PREDICTED: transcription factor bHLH110-like
TrEMBLA0A0D9VZA20.0A0A0D9VZA2_9ORYZ; Uncharacterized protein
STRINGLPERR03G29370.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80822529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-27bHLH family protein