PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G29910.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 141aa    MW: 15301.2 Da    PI: 8.8227
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G29910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.92.2e-1360109150
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      e+e++r+rrk +NR++ArrsR+RK+++++eL +  + L +eN+aL+++l 
  LPERR03G29910.1  60 EEERRRQRRKVSNRLSARRSRARKQQRLDELVTAGERLRGENRALASRLH 109
                      7899******************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-1055108No hitNo description
SMARTSM003383.8E-959138IPR004827Basic-leucine zipper domain
PfamPF001708.3E-1060109IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.96762108IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.72E-864109No hitNo description
PROSITE patternPS0003606782IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MLSLQEALDF VDQDVMTSGF MPWGPDTCPT LDQLMASSSS PSPSPSSTTC SGENPAADDE  60
EERRRQRRKV SNRLSARRSR ARKQQRLDEL VTAGERLRGE NRALASRLHA QMITPPPPPP  120
PPTTTTTRSA AAAAVLASLM A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17683RRSRARKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G29910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072077e-39AC107207.9 Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence.
GenBankAC1334507e-39AC133450.6 Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence.
GenBankAP0149597e-39AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665488.17e-29ocs element-binding factor 1-like
TrEMBLA0A0D9VZI04e-95A0A0D9VZI0_9ORYZ; Uncharacterized protein
STRINGLPERR03G29910.17e-96(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138452429