PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G31200.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 181aa    MW: 19479.8 Da    PI: 7.3933
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G31200.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.44.2e-37221221101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+C++dCvlap+fpa++p+++a+v+++FGa n+ ++l++lp +er +a++s++ eA  r++dPvyG++gvi++lq +++ ++ el
  LPERR03G31200.2  22 RCAACKFLRRQCSRDCVLAPHFPASDPHRYACVQRVFGAGNIARMLQHLPVQERGRAADSMAAEAYRRVQDPVYGCAGVINRLQDDIRAAQCEL 115
                      6********************************************************************************************* PP

           DUF260  95 allkeel 101
                      a +++++
  LPERR03G31200.2 116 AWTRAQI 122
                      *999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.12121122IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3522119IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0009640Biological Processphotomorphogenesis
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010080Biological Processregulation of floral meristem growth
GO:0010081Biological Processregulation of inflorescence meristem growth
GO:0010082Biological Processregulation of root meristem growth
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0004181Molecular Functionmetallocarboxypeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MSPGEEMEEL AHGSSSGGVS RRCAACKFLR RQCSRDCVLA PHFPASDPHR YACVQRVFGA  60
GNIARMLQHL PVQERGRAAD SMAAEAYRRV QDPVYGCAGV INRLQDDIRA AQCELAWTRA  120
QIAMQGAAAA HAREATTAQR QRDGGGVAAG APTPPPQQQQ ATASDAAWQL DEYLDSGFPF  180
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-29151154104LOB family transfactor Ramosa2.1
5ly0_B9e-29151154104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G31200.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0870961e-65AC087096.11 Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence.
GenBankAP0149591e-65AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-65CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690105.13e-67PREDICTED: LOB domain-containing protein 24-like
SwissprotP594682e-39LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A0D9W0011e-128A0A0D9W001_9ORYZ; Uncharacterized protein
STRINGOGLUM03G36620.11e-75(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.12e-38LOB domain-containing protein 24