PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G31550.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 353aa    MW: 40251 Da    PI: 5.3131
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G31550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35401312102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye+++d++++ ++sws ++nsfvv+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+
  LPERR03G31550.1  40 FLTKTYEMVDDPTTDAMVSWSPTSNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKNLLK 124
                      9********************999*****************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +ikr+k 
  LPERR03G31550.1 125 NIKRRKP 131
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.3E-6136129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.76E-3636129IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-3936129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.8E-3240129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-204063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-2091103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSYRMVNPVK VESRQSSGEV NGQLPPRPMD GLADGGPPPF LTKTYEMVDD PTTDAMVSWS  60
PTSNSFVVWD PHLFGNVLLP RYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK  120
NLLKNIKRRK PPHSSPNQQS LGSFLEVGHF GYDGEIDQLK RDKQMLMAEV VKLRQEQQNT  180
RSDLQAMEEK LQGTEQKQQQ MMAFLARVMH NPEFIRQLIS QSEMRKELED FVSKKRRRRI  240
DQGPELDGMV TDSSPEQGSQ VMFEPHDPVE SLFNGVPSDL ESSSIEPKHQ DVSGSSEQGK  300
SRPPNGELNE DFWEDLLHEG GLDEASNPVI QNDMNLLSQK MGYLNSSSNK SAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-293812918120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128LKNIKRR
2233238KKRRRR
3234239KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G31550.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0686600.0AK068660.1 Oryza sativa Japonica Group cDNA clone:J013162K14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650726.10.0PREDICTED: heat stress transcription factor A-2e
SwissprotQ6F3880.0HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLA0A0D9W0450.0A0A0D9W045_9ORYZ; Uncharacterized protein
STRINGLPERR03G31550.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-105heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]