PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G32000.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 245aa    MW: 26285 Da    PI: 7.6282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G32000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.9e-11143190455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  LPERR03G32000.1 143 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 190
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.17E-10137194No hitNo description
SuperFamilySSF474593.93E-18137206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.221139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-18139207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-8143190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDPAPTLAAE LWRPPHLGGG GARAAAVEAA ASGVTEQSNG NRGVDCGGGA GRRRQREAPA  60
PEDDSSRLVS TSGGGGGGQD LTDSEAKRFK ASKSSGDNGS LRTEAETNSR NASKSVDQNP  120
PQQEPPKQDY IHVRARRGQA TDSHSLAERA RREKISERMK ILQDLVPGCN KVIGKASVLD  180
EIINYIQALQ RQVEFLSMKL EAVNAHLNNG IEAFPSKDTP REYAQGSTPS EWLHMQIGGT  240
YERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G32000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001770.0AK100177.1 Oryza sativa Japonica Group cDNA clone:J023029J10, full insert sequence.
GenBankHQ8588470.0HQ858847.1 Oryza sativa Japonica Group isolate UT1610 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629323.11e-129transcription factor BHLH089-like
SwissprotQ84T081e-130BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A0D9W0A31e-180A0A0D9W0A3_9ORYZ; Uncharacterized protein
STRINGLPERR03G32000.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-64BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]