PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G32540.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 293aa    MW: 31152.4 Da    PI: 7.0104
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G32540.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1742e-23185247163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkrerrkq+NRe+ArrsR+RK++e+eeL +kv eL+a N+aL++el++lkk ++ ++ e+
  LPERR03G32540.2 185 ERELKRERRKQSNRESARRSRLRKQQECEELSQKVTELTAVNSALRSELNKLKKDCEDMEVEN 247
                      89********************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.9E-17178244No hitNo description
PfamPF001704.3E-21185247IPR004827Basic-leucine zipper domain
SMARTSM003388.8E-21185249IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.898187250IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.75E-10188242No hitNo description
CDDcd147021.15E-18190240No hitNo description
PROSITE patternPS000360192207IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MASSAASPSS SKSDDDRRQE GADEPAAMQA YYAGVAGAGG GHPYAAWPPP QQHLMAAAAA  60
AYGAAVPFPM YHPAYYAHAS SMAASVPHMS GGAAASTAGT AAAAEGKSKR KTFGGPSGED  120
SSRRACQCHR QSGENWVMPT QKAAMSDQSP ANAAPNLNIG MDIWSTSSMA AMPSGQDKAL  180
SQMDERELKR ERRKQSNRES ARRSRLRKQQ ECEELSQKVT ELTAVNSALR SELNKLKKDC  240
EDMEVENSQL MDEMAQSEGS SVITTLSIKI DTSKDHHGSS GQLNKHTNDD GKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201207RRSRLRK
2201208RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G32540.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022507e-87AK102250.1 Oryza sativa Japonica Group cDNA clone:J033088G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879815.11e-114DNA-binding protein EMBP-1 isoform X4
SwissprotP250327e-49EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A0D9W0H50.0A0A0D9W0H5_9ORYZ; Uncharacterized protein
STRINGLPERR03G32540.11e-152(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.22e-30G-box binding factor 1