PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G32730.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 227aa    MW: 24515.9 Da    PI: 7.0657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G32730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.19.9e-065376326
                     HHHHHHHHHHHHHHHHHHHHHHCT CS
              HLH  3 rahnerErrRRdriNsafeeLrel 26
                     r+h e+E+rRR+ri+s +++Lr++
  LPERR03G32730.1 53 RNHREAEKRRRERIKSHLDRLRSI 76
                     78********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-85397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MFPVEVAAAR TTMMQGSGEA AVVPMMLPPF FMDSGDEAAA AAAAQDRALT ASRNHREAEK  60
RRRERIKSHL DRLRSIDKAS LLAKAVERVR DLKQRMAGIG ADASSATAVF PTEHDEIVVL  120
ASGGGAVFEA SVCCDDRSDL LPELIETLRS LRLRTLRAEM ATLGGRVRNV LVLARDAAGE  180
DDEHSADGEH GGDFLKEALR ALVERPGAAG GGRDRPKRRR VVSDMNM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216220KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G32730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981312.12e-69transcription factor bHLH106-like
SwissprotO806744e-43BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A0D9W0L21e-158A0A0D9W0L2_9ORYZ; Uncharacterized protein
STRINGLPERR03G32730.11e-158(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-31bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]