PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G33230.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 180aa    MW: 18995.1 Da    PI: 7.9325
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G33230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00115779123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  LPERR03G33230.1 57 FVCKTCSRAFPTFQALGGHRTSH 79
                     89**********99998888877 PP
2zf-C2H212.40.00047114136123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F     L  H+r+H
  LPERR03G33230.1 114 HECHICGLGFEMGQALGGHMRRH 136
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-55383No hitNo description
PfamPF139122.2E-105781IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8275784IPR007087Zinc finger, C2H2
SMARTSM003550.585779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-5112139No hitNo description
PfamPF139121.6E-10114139IPR007087Zinc finger, C2H2
PROSITE profilePS501579.827114141IPR007087Zinc finger, C2H2
SMARTSM003550.49114136IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MAKHPRQEEN QEEVSLALSL STDQSAASSD TSSSSAAKKA RRRRNQAVVA TSGEGEFVCK  60
TCSRAFPTFQ ALGGHRTSHL RGRSNGLDLG VVGEKAIKQL RAGGAGGERA AEKHECHICG  120
LGFEMGQALG GHMRRHREEM AGGGGAGAGS AADDWVWRCD AARPEERAAA EPPVLLELFA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G33230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629244.15e-73zinc finger protein ZAT12
TrEMBLA0A0D9W0S51e-126A0A0D9W0S5_9ORYZ; Uncharacterized protein
STRINGLPERR03G33230.11e-127(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-19C2H2 family protein