PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G33240.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 145aa    MW: 15209.4 Da    PI: 10.394
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G33240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00164971123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  LPERR03G33240.1 49 FVCKTCSRAFPSFQALGGHRTSH 71
                     89**********99998888777 PP
2zf-C2H214.69.8e-05100122123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg+ F     L  H+r+H
  LPERR03G33240.1 100 HECHICGQGFEMGQALGGHMRRH 122
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.11E-54775No hitNo description
PfamPF139128.5E-114973IPR007087Zinc finger, C2H2
SMARTSM003550.514971IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6814976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
SuperFamilySSF576672.7E-699126No hitNo description
PROSITE profilePS5015710.512100127IPR007087Zinc finger, C2H2
PfamPF139121.5E-10100125IPR007087Zinc finger, C2H2
SMARTSM003550.23100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MTKHPRDVEA ISLSLTLSLF ADGVSTTGGG ERKRLRRGSS PAASGGGEFV CKTCSRAFPS  60
FQALGGHRTS HLRGRHGLAL GLATGKENPK KLQEKAAASH ECHICGQGFE MGQALGGHMR  120
RHREEAAAAA VAGVQAPPVL LELFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G33240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629272.17e-52zinc finger protein ZAT12
TrEMBLA0A0D9W0S68e-99A0A0D9W0S6_9ORYZ; Uncharacterized protein
STRINGLPERR03G33240.11e-99(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-19C2H2 family protein