PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G33770.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 225aa    MW: 25290.9 Da    PI: 9.8382
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G33770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.83.4e-1312104391
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      pG+ F+P+d+ l++ yL +k+++++++  + i+++d+y ++P dL +       ++ +++ wy F++ + ++++ +  +r  ++  W  t + +
  LPERR03G33770.1  12 PGLVFRPSDDKLITLYLPPKITNTPFKN-NLISNADVYCSDPADLVAnhnpapGTQDSSSVWYLFCSPRYTSKRVSSGRR-QRHPAWMITRRMR 103
                      8************************999.89**************7435666655556679*****99887776555555.4668898887766 PP

              NAM  91 e 91 
                      +
  LPERR03G33770.1 104 H 104
                      5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.78110174IPR003441NAC domain
SuperFamilySSF1019411.44E-1411103IPR003441NAC domain
PfamPF023652.1E-612103IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGADGEMSPD RPGLVFRPSD DKLITLYLPP KITNTPFKNN LISNADVYCS DPADLVANHN  60
PAPGTQDSSS VWYLFCSPRY TSKRVSSGRR QRHPAWMITR RMRHPACGRG KRPPPAASKI  120
SSRRVCYRRG LTWMLFWSRF GWTTTWETTT CSAMPRWNSV RGIFFTTSCL VLRRWSSSVV  180
AGTFFQTATG PCIDAEVMER LAAGETVDEI LGTTPLIGQQ EVQCF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G33770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9W0Y71e-166A0A0D9W0Y7_9ORYZ; Uncharacterized protein
STRINGLPERR03G33770.11e-167(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.19e-08NAC domain containing protein 53