PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G33900.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GATA
Protein Properties Length: 138aa    MW: 15434.6 Da    PI: 10.5102
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G33900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.61.1e-202660135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ C+ttkTplWR gp+g+k+LCnaCG++yrkk++
  LPERR03G33900.1 26 CTDCHTTKTPLWRGGPSGPKSLCNACGIRYRKKRR 60
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.04E-141959No hitNo description
PROSITE profilePS5011413.312056IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-172081IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-162460IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.00E-152560No hitNo description
PfamPF003202.0E-182660IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MDSSVEKGSG SIDPDERTAS GEPKACTDCH TTKTPLWRGG PSGPKSLCNA CGIRYRKKRR  60
EALGLDAGEG GADRQEKKKS KREREREREE VTVELRMGGF GKEVVLKQRR RMRRRRRLGE  120
EEKAAILLMA LSSGVIYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107113QRRRMRR
2109114RRMRRR
3109116RRMRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G33900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0737091e-164AK073709.1 Oryza sativa Japonica Group cDNA clone:J033058P14, full insert sequence.
GenBankCT8319411e-164CT831941.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631979.11e-77GATA transcription factor 16
TrEMBLA0A0D9W1015e-93A0A0D9W101_9ORYZ; Uncharacterized protein
STRINGLPERR03G33900.19e-94(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-24GATA transcription factor 15