PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G33950.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 225aa    MW: 24487.4 Da    PI: 8.1852
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G33950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM422.8e-1361493128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............kvkaeekewyfFskrdkkyat..gkrknratk... 79 
                      +G+ F+Ptd++l + yL++ + + +   +++++ +d+y++ P +L +              +++++ wy  ++ +    +   +rk r++    
  LPERR03G33950.1   6 KGLVFSPTDNQLTDVYLRRYLLRLDDLPSSCFHVADVYSASPDRLLAnlapapgtgngdDGDGDDRVWYVPTPVRLLGGKiaRRRKDRTVVgdg 99 
                      7999****************9998844447899************7446787876655433335567776666655444311446666432455 PP

              NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                        g W+a g  ++v    ++  g  + L +y++  +   g k +W+m ey+l
  LPERR03G33950.1 100 gGGCWRAEGWAEDVRG--SAGGGRMQKLSYYRAeySGGGGIKREWIMVEYSL 149
                      5899**********88..566799999****7622556678*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.6844164IPR003441NAC domain
SuperFamilySSF1019412.22E-205164IPR003441NAC domain
PfamPF023652.9E-107149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAGTIKGLVF SPTDNQLTDV YLRRYLLRLD DLPSSCFHVA DVYSASPDRL LANLAPAPGT  60
GNGDDGDGDD RVWYVPTPVR LLGGKIARRR KDRTVVGDGG GGCWRAEGWA EDVRGSAGGG  120
RMQKLSYYRA EYSGGGGIKR EWIMVEYSLP GSEHLVALCK LYRSPRYSRY ITPPSMTSSP  180
STSVASGSKR KADQEEADHR DAPACSVRRQ NPPPDAGQET AEPFC
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G33950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690139.11e-38PREDICTED: uncharacterized protein LOC107303819
TrEMBLA0A0D9W1071e-163A0A0D9W107_9ORYZ; Uncharacterized protein
STRINGLPERR03G33950.11e-164(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62801545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.13e-07NAC domain containing protein 63