PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G34030.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 959aa    MW: 104723 Da    PI: 5.2776
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G34030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.11.7e-40141218178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqv+gC+adls +k+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  LPERR03G34030.1 141 TCQVDGCTADLSAVKDYHRRHKVCEMHAKATTCVVGKTVQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTRP 218
                      6**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.4E-33134203IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.231139216IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.09E-37140221IPR004333Transcription factor, SBP-box
PfamPF031103.8E-29142215IPR004333Transcription factor, SBP-box
SuperFamilySSF484037.9E-9704851IPR020683Ankyrin repeat-containing domain
CDDcd002042.44E-9716846No hitNo description
Gene3DG3DSA:1.25.40.201.4E-8742842IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 959 aa     Download sequence    Send to blast
METARVGAQK RLFGWDLNDW RWDSERFVAT PVPTTAAAAA SGLALNSSPS SSEEAEASVP  60
RNVNVRGDFD KRKRVVVIDD DDDDDVEEYE EPVGNGGGSL SLRIGGDAVA HGAGVGGGAG  120
DEEDRNGKKI KVQGGSSSGP TCQVDGCTAD LSAVKDYHRR HKVCEMHAKA TTCVVGKTVQ  180
RFCQQCSRFH LLQEFDEGKR SCRRRLAGHN RRRRKTRPEV AVTGSALAED KVNSYLLLGL  240
LGVCANLNAD SAENLRGQEL LSNLWKNLGA VAKSLDPKEL CKLLEACQSM QDGSNAGTSE  300
TANTLVNTAV AEAAGPSNSK MPFVSGDQCG LASTSVVPVQ SKSPTVATPE PPACKLKDFD  360
LNDTCGDMEG FEDGYEGSPT PAFKTTDSPN CPSWMHQDST QSPPQTSGNS DSTSAQSLSS  420
SNGDAQCRTD KIVFKLFEKV PSDLPPVLRS QILGWLSSSP TDIESYIRPG CIILTVYLRL  480
VESAWKELYD NMSSYLDKLL NSSTGNFWAS GLVFVMVRHQ IAFMHNGQVM LDRPLAISSH  540
HYCKILCVRP IAAPFSTKVN FRVEGFNLVS ASSRLICSFE GCCLFQEDTD NIVDDAEHDD  600
IEYLNFCCPF PGSRGRGFVE VEDGGFSNGF FPFIIAEQEI CSEVCELESV FEPSSHEQAD  660
DDNARNQALE FLNELGWLLH RANRISKQDK FPLASFNIWR FRNLGIFAME RDWCAVTKLL  720
LDFLFIGLVD MGSQSPEEVV LSENLLHAAV RRKSAQMVRF LLGYKPNESL KGTAKTFLFR  780
PDAQGPSKLT PLHIAAATND AEDVLDALTD DPGLVWINAW RSARDDAGFT PEDYACQRGN  840
DAYLNMVEKK INKHLGKGHV VLGVPSSMHP VISDGVKPGE ASLEIGMNVP PQASQCNACS  900
RQALMHPNST ARTFLYRPAM LTVMGIAVVC VCVGLLLHTC PKVYAAPTFR WELLERGAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-31135215484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G34030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698470.0AK069847.1 Oryza sativa Japonica Group cDNA clone:J023034C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631511.10.0squamosa promoter-binding-like protein 6 isoform X1
SwissprotQ75LH60.0SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLA0A0D9W1170.0A0A0D9W117_9ORYZ; Uncharacterized protein
STRINGLPERR03G34030.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]