PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G34530.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 304aa    MW: 33025.7 Da    PI: 5.0591
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G34530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.96.6e-22121523128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkya..tgkrknratksgy...Wka 85 
                      pG+ F+P+d+ l++ yL++k+++++++  + i+++d+y+++P +L +       ++ +++ wyfF++ + +++  ++ r++ra+ sg    Wk+
  LPERR03G34530.1  12 PGLVFRPSDDKLISLYLRPKIAKTPFKD-NLINNADVYSSDPANLVAnhnpapGTQDSSSVWYFFCSPRYTSKrvSSGRRQRAVGSGAestWKS 104
                      8************************999.89**************7435666655556679*****9877666234667788777554444*** PP

              NAM  86 tgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                       g +k+v  ++g+ vg  + + +      + +++  ++  W+m ey+l
  LPERR03G34530.1 105 EGGKKAVNGADGRRVGYLQKFSYGvydssSSSKRAFTRLGWCMTEYSL 152
                      *****************99999965565444555667999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.42710174IPR003441NAC domain
SuperFamilySSF1019413.92E-3012174IPR003441NAC domain
PfamPF023654.1E-1412152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGADGETAPD RPGLVFRPSD DKLISLYLRP KIAKTPFKDN LINNADVYSS DPANLVANHN  60
PAPGTQDSSS VWYFFCSPRY TSKRVSSGRR QRAVGSGAES TWKSEGGKKA VNGADGRRVG  120
YLQKFSYGVY DSSSSSKRAF TRLGWCMTEY SLDDGDVTTN GSPEKHVLCK VYRSPRAATT  180
TKRKANQEAL VEEAPPSARP RQETSSGSEQ DKQSSCLLPP GFDLDAFLES FWMDHNNNVS  240
SNATVEQLPC APAMELVGGD GDFFQTTSGP CMDAEVMERL AAGETVDDIL GMSPLVGQDL  300
VQCF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G34530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629669.11e-109NAC domain-containing protein 71-like
RefseqXP_015629670.11e-109NAC domain-containing protein 71-like
TrEMBLA0A0D9W1780.0A0A0D9W178_9ORYZ; Uncharacterized protein
STRINGLPERR03G34530.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-15NAC domain containing protein 2